Job Description Q5HYK7 Confidence 93.32% Date Sat Jun 16 10:27:40 BST 2012 Rank 230 Aligned Residues 238 % Identity 10% Template c1m9sA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains. Resolution 2.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		Y	R	G	N	C	R	N	Q	I	G	I	F	P	A	N	Y	V	K	V	I	I	D	I	P	E	G	G	N	G	K	R	E	C	V	S	S	H	C	V	K	G	S	R	C	V	A	R	F	E	Y	I	G	E	Q	K	D	E	L	S	F	S	E	G	E	I	I	I	L	K	E	Y	V	N	E	E	.	.	.	W	A
Query Conservation																																																																													.	.	.
Alig confidence																																																										.																			.	.	.
Template Conservation																																																										.
Template Sequence		Q	P	V	T	I	G	K	A	K	A	R	F	H	G	R	V	T	Q	P	L	E	T	T	E	K	T	V	N	L	T	R	Y	V	K	Y	I	R	G	N	A	G	I	Y	K	L	P	R	E	D	N	S	L	K	Q	G	T	.	L	A	S	H	R	C	K	A	L	T	V	D	R	E	A	R	N	G	G	K	L	W	Y
Template Known Secondary structure							T	T																			S									S	T	T	T	T					S	S	S	S			G	G	G					.	S		T	T	T	T	S				B						B	T	T	B
Template Predicted Secondary structure																																																										.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.		.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	E	V	R	G	R	T	G	I	F	P	L	N	F	V	E	P	V	E	D	Y	P	T	S	G	A	N	V	L	S	T	K	V	P	L	K	T	K	K	E	D	S	G	S	N	S	Q	V	N	S	L	P	A	E	W	C	E	A	L	H	S	F	T	A	E	T	S	D	D	L	S	F	K	R	G	D	R	I	Q
Query Conservation
Alig confidence						.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	K	N	.	.	.	I	G	W	T	K	A	E	N	L	S	L	D	R	Y	D	K	M	E	Y	D	K	G	V	T	A	Y	A	R	V	R	N	A	S	G	N	S	V	W	T	K	P	Y	N	T	A	G	A	K	H	V	N	K	L	S	V	Y	.	.	.	.	.	.	.	.	.	.	.	Q	G	K	N	M	R
Template Known Secondary structure			B	T	T	.	.	.	S					T	T	T	S		S	S						S												S			T	T				B	S	S	S	S	S	S	T	T							G	G	G	G	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure						.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		450	.	.	.				.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.												510	.	.	.	.	.
		690	.	.	.				.	.	.	.	.	.	700	.	.	.	.	.	.	.		.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.									.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.															.																						.	.	.	.	.	.	.	.
Query SS confidence						.	.	.															.																						.	.	.	.	.	.	.	.
Query Sequence		I	L	E	R	.	.	.	L	D	S	D	W	C	R	G	R	L	Q	D	R	E	.	G	I	F	P	A	V	F	V	R	P	C	P	A	E	A	K	S	M	L	A	I	.	.	.	.	.	.	.	.	V	P	K	G	R	K	A	K	A	L	Y	D	F	R	G	E	N	E	D	E	L	S	F	K	A	G	D	I	I
Query Conservation						.	.	.															.																						.	.	.	.	.	.	.	.
Alig confidence						.	.	.															.																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	R	E	A	K	T	P	I	T	T	W	Y	Q	F	S	I	G	G	K	V	I	G	W	V	D	T	R	A	L	N	T	F	Y	K	Q	S	M	E	K	P	T	R	L	T	R	Y	V	S	A	N	K	A	G	E	S	Y	Y	K	V	P	V	A	D	N	P	V	K	R	G	T	L	A	K	Y	K	N	Q	K	L
Template Known Secondary structure									S	S									T	T								T	T	T							G	G	G												T	T	T	T	T	S				S	S	S	S			G	G	G					G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
		758	.	760	.	.				.	.	.	.	.	.	.	770	.	.		.	.	.	.	.	.	.	780	.	.	.	.	.
Predicted Secondary structure							.	.	.											.
Query SS confidence							.	.	.											.
Query Sequence		T	E	L	E	S	.	.	.	V	D	D	D	W	M	S	G	E	L	.	M	G	K	S	G	I	F	P	K	N	Y	I	Q
Query Conservation							.	.	.											.
Alig confidence							.	.	.											.
Template Conservation
Template Sequence		I	V	D	C	Q	A	T	I	E	G	Q	L	W	Y	R	I	R	T	S	S	T	F	I	G	W	T	K	A	A	N	L	R
Template Known Secondary structure										T	T									S	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		596	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions