01/05/2012 06:15:49 : INFO  : Run start: Tue May  1 06:15:49 BST 2012
01/05/2012 06:15:49 : INFO  : Initialised job
01/05/2012 06:15:49 : INFO  : Initialised job:
Sequence
>batch____
MQQEGGPVRSAPCRTGTLEGSRQGSPGHRKRASPKGSLSSAQPHSWMLTPSPLNSHCAHR
EPISSSPQPVANGPKQKKKSNWRSTTRLRIIRLRDRLEPRPLAILEDYADPFDVQETGEG
SAGASGAPEKVPENDGYMEPYEAQKMMAEIRGSKETATQPLPLYDTPYEPEEDGATAEGE
GAPWPRESRLPEDDERPPEEYDQPWEWKKERISKAFAVDIKVIKDLPWPPPVGQLDSSPS
LPDGDRDISGPASPLPEPSLEDSSAQFEGPEKSCLSPGREEKGRLPPRLSAGNPKSAKPL
SMEPSSPLGEWTDPALPLENQVWYHGAISRTDAENLLRLCKEASYLVRNSETSKNDFSLS
LKSSQGFMHMKLSRTKEHKYVLGQNSPPFSSVPEIVHHYASRKLPIKGAEHMSLLYPVAI
RTL

01/05/2012 06:15:49 : INFO  : Checked sequence
01/05/2012 06:15:49 : INFO  : Finding homologues with PSI-BLAST
01/05/2012 06:15:49 : INFO  : PSI-BLAST 3 iterations
01/05/2012 06:18:04 : INFO  : PSI-BLAST 5 iterations
01/05/2012 06:25:28 : INFO  : Finished PSI-BLAST
01/05/2012 06:25:28 : INFO  : Running Buildali to generate a3m file
01/05/2012 06:46:55 : INFO  : Converting to HMM
01/05/2012 06:46:56 : INFO  : Calibrating HMM
01/05/2012 06:47:05 : INFO  : Searching HMM database
01/05/2012 06:57:46 : INFO  : Finished buildali
01/05/2012 06:57:46 : INFO  : Predicting secondary structure
01/05/2012 06:57:46 : INFO  : Predicted secondary structure (PSI-Pred)
01/05/2012 06:57:46 : INFO  : Predicting Disordered regions
01/05/2012 06:57:46 : INFO  : Predicted Disorder (Disopred)
01/05/2012 06:57:46 : INFO  : Running memsat_svm check
01/05/2012 07:00:31 : INFO  : Globular protein
01/05/2012 07:00:31 : INFO  : Predicted Transmembrane (memsat_svm) ID '8de3b2dd883ef075'
01/05/2012 07:00:31 : INFO  : Initialising fold library search
01/05/2012 07:00:31 : INFO  : Initialised search input
01/05/2012 07:00:31 : INFO  : Building Ensemble models
01/05/2012 07:00:32 : INFO  : Building hh.c3hizB_.model.1.pdb
01/05/2012 07:00:32 : INFO  : Building hh.c2eo6A_.model.2.pdb
01/05/2012 07:00:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/hh.c2eo6A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/c2eo6A_.1.pdb
01/05/2012 07:00:33 : INFO  : Building hh.c2y3aB_.model.3.pdb
01/05/2012 07:00:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/hh.c2y3aB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/c2y3aB_.2.pdb
01/05/2012 07:00:33 : INFO  : Building hh.c2gsbA_.model.4.pdb
01/05/2012 07:00:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/hh.c2gsbA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/c2gsbA_.5.pdb
01/05/2012 07:00:33 : INFO  : Building hh.d1pica_.model.5.pdb
01/05/2012 07:00:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/hh.d1pica_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/d1pica_.7.pdb
01/05/2012 07:00:34 : INFO  : Building hh.d3c7ia1.model.6.pdb
01/05/2012 07:00:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/hh.d3c7ia1.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/d3c7ia1.9.pdb
01/05/2012 07:00:34 : INFO  : Building hh.c2cr4A_.model.7.pdb
01/05/2012 07:00:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/hh.c2cr4A_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/8de3b2dd883ef075/c2cr4A_.88.pdb
01/05/2012 07:00:35 : INFO  : Building c2eo6A_.1.pdb
01/05/2012 07:00:35 : INFO  : Building c2y3aB_.2.pdb
01/05/2012 07:00:36 : INFO  : Building c3hizB_.3.pdb
01/05/2012 07:00:36 : INFO  : Building c2crhA_.4.pdb
01/05/2012 07:00:36 : INFO  : Building c2gsbA_.5.pdb
01/05/2012 07:00:37 : INFO  : Building d2oq1a1.6.pdb
01/05/2012 07:00:37 : INFO  : Building d1pica_.7.pdb
01/05/2012 07:00:38 : INFO  : Building c2oq1A_.8.pdb
01/05/2012 07:00:38 : INFO  : Building d3c7ia1.9.pdb
01/05/2012 07:00:38 : INFO  : Building c2eo3A_.10.pdb
01/05/2012 07:00:39 : INFO  : Building c1ka6A_.11.pdb
01/05/2012 07:00:39 : INFO  : Building d2shpa2.12.pdb
01/05/2012 07:00:39 : INFO  : Building c2dlzA_.13.pdb
01/05/2012 07:00:40 : INFO  : Building c2dlyA_.14.pdb
01/05/2012 07:00:40 : INFO  : Building d1fhsa_.15.pdb
01/05/2012 07:00:40 : INFO  : Building c2vifA_.16.pdb
01/05/2012 07:00:41 : INFO  : Building c2shpA_.17.pdb
01/05/2012 07:00:41 : INFO  : Building c2fo0A_.18.pdb
01/05/2012 07:00:42 : INFO  : Building c2eobA_.19.pdb
01/05/2012 07:00:42 : INFO  : Building d1ayaa_.20.pdb
01/05/2012 07:00:46 : INFO  : Finished HH model building
01/05/2012 07:00:46 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
01/05/2012 07:00:53 : INFO  : html domain output complete ID '8de3b2dd883ef075'
01/05/2012 07:43:26 : INFO  : Run end  : Tue May  1 07:43:26 BST 2012
