Job Description Q5TCZ1 Confidence 100.00% Date Sat Jun 16 10:24:30 BST 2012 Rank 1 Aligned Residues 270 % Identity 19% Template c2dybA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: the crystal structure of human p40(phox) Resolution 3.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	A	T	V	V	D	V	E	K	R	R	N	P	S	K	H	Y	V	Y	I	I	N	V	T	W	S	D	S	T	S	Q	T	I	Y	R	R	Y	S	K	F	F	D	L	Q	M	Q	L	L	D	K	F	P	I	E	G	G	Q	K	D	P	K	Q	R	I	I	P	F	L	P	G	K	I	L	F	R	R	S	H	I
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.														.	.
Template Sequence		I	S	A	N	I	A	D	I	E	E	K	R	G	F	T	S	H	F	V	F	V	I	E	V	K	T	K	G	G	S	K	Y	L	I	Y	R	R	Y	R	Q	F	H	A	L	Q	S	K	L	E	E	R	F	G	.	.	.	.	.	.	.	.	.	.	.	T	L	P	T	L	P	A	K	V	Y	V	G	V	.	.	K
Template Known Secondary structure														S	S	S												T	T	S																							T		.	.	.	.	.	.	.	.	.	.	.												S		.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.												.	.	.	.	.	80	.	.	.	.	.	.	.			.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	V	A	V	K	R	L	K	P	I	D	E	Y	C	R	A	L	V	R	L	P	P	H	I	S	Q	C	D	E	V	F	R	F	F	E	A	R	P	E	D	V	N	P	P	K	E	D	Y	G	S	S	K	R	K	S	V	W	L	S	S	W	A	E	S	P	K	K	D	V	T	G	A	D	A	T	A	E	P	M
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	E	I	A	E	M	R	I	P	A	L	N	A	Y	M	K	S	L	L	S	L	P	V	W	V	L	M	D	E	D	V	R	I	F	F	Y	Q	S	P	Y	D	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	P	Q	A	L	R	R	L	R	P	R	R	M
Template Known Secondary structure																						S						T									S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.																								.	.	.	.	.	.	.	.	150	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	E	Q	Y	V	V	V	S	N	Y	K	K	Q	E	N	S	E	L	S	L	Q	A	G	E	V	V	D	V	I	E	K	N	E	S	G	W	W	F	V	S	T	S	E	E	Q	G	W	V	P	A	T	Y	L	E	A	Q	N	G	T	R	D	D	S	D	I	N	T	S	K	T	G	E	V	S	K	R	R	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	P	R	A	E	A	L	F	D	F	T	G	N	S	K	L	E	L	N	F	K	A	G	D	V	I	F	L	L	S	R	I	N	K	D	W	L	E	G	T	V	R	G	A	T	G	I	F	P	L	S	F	V	K	I	L	K	D	F	P	E	E	D	D	P	T	N	W	L	R	C	Y	Y	Y	E	D	T	I	S
Template Known Secondary structure									S	S		B			S	S	S	S	B			B		T	T										S	S	S							T	T							G	G	G										T	T													S	S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.				.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																												.	.																				.	.	.
Query SS confidence																																												.	.																				.	.	.
Query Sequence		H	L	R	R	L	D	R	R	W	T	L	G	G	M	V	N	R	Q	H	S	R	E	E	K	Y	V	T	V	Q	P	Y	T	S	Q	S	K	D	E	I	G	F	E	.	.	K	G	V	T	V	E	V	I	R	K	N	L	E	G	W	W	Y	I	R	.	.	.	Y	L	G	K	E	G	W	A	P
Query Conservation																																												.	.																				.	.	.
Alig confidence																				.	.	.	.																					.	.																				.	.	.
Template Conservation																				.	.	.	.
Template Sequence		T	I	K	D	I	A	V	E	E	D	L	S	S	T	P	L	L	K	.	.	.	.	D	L	L	E	L	T	R	R	E	F	Q	R	E	D	I	A	L	N	Y	R	D	A	E	G	D	L	V	R	L	L	S	D	E	D	V	A	L	M	V	R	Q	A	R	G	L	P	S	Q	K	R	L	F	P
Template Known Secondary structure										S		T	T							.	.	.	.											T		S									S	S	S							S												T	T	S			B	T	T	B		S
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions