Job Description Q9HB75 Confidence 99.12% Date Wed May 9 17:48:56 BST 2012 Rank 98 Aligned Residues 83 % Identity 28% Template c3mopC_ PDB info PDB header:signaling protein, immune system Chain: C: PDB Molecule:myeloid differentiation primary response protein myd88; PDBTitle: the ternary death domain complex of myd88, irak4, and irak2 Resolution 3.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	L	S	V	A	G	R	L	G	L	D	W	P	A	V	A	L	H	L	G	V	S	Y	R	E	V	Q	R	I	R	H	E	F	R	D	D	L	D	E	Q	I	R	H	M	L	F	S	W	A	E	R	Q	A	G	Q	P	G	A	V	G	L	L	V	Q	A	L	E	Q	S	D	R	Q	D	V	A	E	E	V
Query Conservation
Alig confidence																																					.	.	.	.	.																	.	.	.
Template Conservation																																					.	.	.	.	.																	.	.	.
Template Sequence		S	L	F	L	N	V	R	T	Q	V	A	A	D	W	T	A	L	A	E	E	M	D	F	E	Y	L	E	I	R	Q	L	E	T	Q	A	.	.	.	.	.	D	P	T	G	R	L	L	D	A	W	Q	G	R	P	G	A	.	.	.	S	V	G	R	L	L	E	L	L	T	K	L	G	R	D	D	V	L	L	E	L
Template Known Secondary structure						T	S			S	S	S										T	T								T	T	S	S	S	S	.	.	.	.	.								T	T	T	T	S	S	S	S		.	.	.		S										T	T		T	T					S
Template Predicted Secondary structure																																					.	.	.	.	.																	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		870	.	.	.	.	.	.	.	.	.	880
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	V	L	E	L	G	R	R	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	S	I	E	E	D	C	Q	K	Y
Template Known Secondary structure									T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions