Return to main results Retrieve Phyre Job Id

Job DescriptionQ9HB75
Confidence21.37%DateWed May 9 17:48:56 BST 2012
Rank155Aligned Residues63
% Identity29%Templatec2q5xA_
PDB info PDB header:protein transportChain: A: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: crystal structure of the c-terminal domain of hnup98
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   508.510.........520.........530...... ...540........ .550.........560.....
Predicted Secondary structure 












....










..................







Query SS confidence 




























. . . .











. . . . . . . . . . . . . . . . . .
















Query Sequence  GEPEAAVSPLLCLSQSGPPSFLQPVTVQL. . . . PLPSGITGLSLD. . . . . . . . . . . . . . . . . . RSRLHLLYWAPPAATWD
Query Conservation         



 
       
 




 
....
 
         ..................   



        

Alig confidence 








....















....











..................















.
Template Conservation      
 

 ....




 


 

 


    
  
     



           
       
  




  

 
.
Template Sequence  RRKEVVVYL. . . . KPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSW.
Template Known Secondary structure  TT

....


TTBTTBS

S


B
TTT

B


TTTT
TTTT.
Template Predicted Secondary structure 


....

































.
Template SS confidence 















































































   778.780...... ...790.........800.........810.........820.........830.........840.........850..
 
   566...570.........580.........590
Predicted Secondary structure 







Query SS confidence 
























Query Sequence  DITAQVVLELTHLYARFQVTHFSWY
Query Conservation 


           
 
     
  
Alig confidence  ...............









Template Conservation  ............... 
 
 


 
Template Sequence  . . . . . . . . . . . . . . . VFKVSHFAKY
Template Known Secondary structure  ...............SS
S
Template Predicted Secondary structure  ...............


Template SS confidence 
























   857..860......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions