Return to main results Retrieve Phyre Job Id

Job DescriptionQ9HB75
Confidence99.74%DateWed May 9 17:48:56 BST 2012
Rank47Aligned Residues196
% Identity27%Templatec2o6qA_
PDB info PDB header:immune systemChain: A: PDB Molecule:variable lymphocyte receptor a; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors a29
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120.........130.........140.
Predicted Secondary structure 

























































Query SS confidence 















































































Query Sequence  LQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETLP
Query Conservation    
  
 

 
    
    
  

  
  
  
 
  
           
 
  

     
  
  



 
 
  

Alig confidence 



















.......




















...........




















Template Conservation    
  



 
 
  

  
.......   
  
 

 
 
  
    ...........
  
  
  
 

 
 
    
Template Sequence  NNKNSVDCSSKKLTAIPSNI. . . . . . . PADTKKLDLQSNKLSSLPSKA. . . . . . . . . . . FHRLTKLRLLYLNDNKLQTLP
Template Known Secondary structure  TTTT
TTS

SS

S

.......
TT
S

SS

S


TTS...........SSS
TT



SS

S


Template Predicted Secondary structure 
















.......












...........















Template SS confidence 















































































   38.40.........50....... ..60.........70........ .80.........90.........
 
   142 .......150.........160.. .......170.........180........ .190.........200...... ...210.......
Predicted Secondary structure  .













.


















.











.






Query SS confidence 
.



















.

























.

















.










Query Sequence  A. CVLQMRGLGALLLSHNCLSE. LPEALGALPALTFLTVTHNRLQTLPP. ALGALSTLQRLDLSQNLL. DTLPPEIGGLG
Query Conservation   . 
  
  
  
 
  
 
  .

  
  
  
  
 

 
 
  

 .    
  
  
 

 
 
.  

  
  
 
Alig confidence 
.



















.

























.

















.










Template Conservation           
                                                                      
Template Sequence  AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT
Template Known Secondary structure  TTTTSS
TT



SS





TTTTTT
SS



SS





TTTTTT
TT



SS





TTTTTT
T
Template Predicted Secondary structure 















































































Template SS confidence 















































































   100.........110.........120.........130.........140.........150.........160.........170.........
 
   218.220.........230.. .......240.........250..... ....260.........270.....
Predicted Secondary structure 











.















.










Query SS confidence 














.






















.



















Query Sequence  SLLELNLASNRLQSL. PASLAGLRSLRLLVLHSNLLASV. PADLARLPLLTRLDLRDNQL
Query Conservation   
  
 

 
 
  
.
  
  
  
  
 

 
 
  
.
  
  
  
  



 
 
Alig confidence 














.






















.



















Template Conservation                           
  
 
  
 
       
  
  
  
 
  

 
Template Sequence  SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW
Template Known Secondary structure  T



SS

S


TTTTTT
TT



SS

S


TTTTTT
TT



SS
B
Template Predicted Secondary structure 














































Template SS confidence 



























































   180.........190.........200.........210.........220.........230.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions