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Job DescriptionQ9HB75
Confidence99.87%DateWed May 9 17:48:56 BST 2012
Rank22Aligned Residues170
% Identity33%Templatec2xotA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:amphoterin-induced protein 1; PDBTitle: crystal structure of neuronal leucine rich repeat protein amigo-1
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   126...130.........140.........150.........160..... ....170.........180........ .190.........200..
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Query Sequence  HLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPE. . ALGALPALTFLTVTHNRLQTLPP. ALGALSTLQRLDLS
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Template Sequence  ASNILSCSKQQLPNVPQSLP. . SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS
Template Known Secondary structure  TT

SS

SS

SS

..TT
S

SS



TTSSSS

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TTTTTT
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   41........50.........60 .........70.........80.........90.........100.........110........
 
   203......210. ........220.........230..... ....240.........250.........260.........270.........280
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Query Sequence  QNLLDTLPP. EIGGLGSLLELNLASNRLQSLPAS. LAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPP
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Template Sequence  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKLPKLMLLDLSSNKLKKLPL
Template Known Secondary structure  SS



TTTTTT
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TTTTTT
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S

GGGT

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   119120.........130.........140.........150.........160.........170.........180.........190........
 
   281. .......290.......
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Query Sequence  EL. . . . . . LDAPFVRLQGNPLGE
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Template Sequence  TDLQKLPAWVKNGLYLHNNPLEC
Template Known Secondary structure  S
TT

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   203......210.........220.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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