Return to main results Retrieve Phyre Job Id

Job DescriptionQ9HB75
Confidence99.56%DateWed May 9 17:48:56 BST 2012
Rank73Aligned Residues160
% Identity24%Templatec2y5qA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:internalin b; PDBTitle: listeria monocytogenes inlb (internalin b) residues 36-392
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   118.120.........130.........140.........150.........160.........170.........180.........190.......
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  PAGLSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEALGALPALTFLTVTHNRLQTLPPALGALSTLQ
Query Conservation 
     
  
  



 
 
  

  
  
  
  
 
  
 
  

  
  
  
  
 

 
 
  

     
  
 
Alig confidence 
























.





















.



















.









Template Conservation     
  
  
  
 

 
 
  
  .
  
 

  
 

 
 
     .      
             .          
Template Sequence  AVTQNELNSIDQIIANNSDIKSVQG. IQYLPNVTKLFLNGNKLTDIKP. LANLKNLGWLFLDENKVKDL. SSLKDLKKLK
Template Known Secondary structure 
T


TTS

S

TT.GGG
TT


TTS




GG.GTT
TT


TTS



G.GGGGG
TT

Template Predicted Secondary structure 


















.











.

















.









Template SS confidence 















































































   6970.........80.........90... ......100.........110..... ....120.........130..... ....140.....
 
   198.200.........210.. .......220.........230.........240.........250......
Predicted Secondary structure 









.....................































Query SS confidence 














. . . . . . . . . . . . . . . . . . . . .











































Query Sequence  RLDLSQNLLDTLPPE. . . . . . . . . . . . . . . . . . . . . IGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVP
Query Conservation   
 

 
 
  

  .....................
  
  
  
 

 
 
  

  
  
  
  
 

 
 
  

Alig confidence 














.....................



















.






















Template Conservation                                               
          .        
  
 

 
 

   
Template Sequence  SLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI. VPLAGLTKLQNLYLSKNHISDLR
Template Known Secondary structure 
TTS




GGGGG
TT
S

SS




GGGGG
TT
S

SS

S

.GGGTT
TT



SS


B
G
Template Predicted Secondary structure 





















































.






















Template SS confidence 















































































   146...150.........160.........170.........180.........190.........200. ........210.........220....
 
   257..260.........270.........280..
Predicted Secondary structure 












Query SS confidence 

























Query Sequence  ADLARLPLLTRLDLRDNQLRDLPPEL
Query Conservation    
  
  
  



 
 
  

   
Alig confidence 
.























Template Conservation   .
  
  
  
 

 
 

      
Template Sequence  A. LAGLKNLDVLELFSQECLNKPINH
Template Known Secondary structure  G.GTT
TT
S







Template Predicted Secondary structure 
.














Template SS confidence 

























   225 ....230.........240.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions