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Job DescriptionQ9HB75
Confidence99.90%DateWed May 9 17:48:56 BST 2012
Rank15Aligned Residues222
% Identity33%Templatec2z63A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv8 hybrid of human tlr4 and hagfish vlrb.61
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90.........100.........110.........120.........130.........140
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Query Sequence  LLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETL
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Template Conservation     
  
 

 
 
  
    
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Template Sequence  PFSTKNLDLSFNPLRHLGSYSFF. . . . SFPELQVLDLSRCEIQTIEDGA. . . . . . . . . . . YQSLSHLSTLILTGNPIQSL
Template Known Secondary structure 
SS



S




TTTTT....T
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TT




TTT...........TTT
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   53......60.........70..... ....80.........90....... ..100.........110.......
 
   141 ........150.........160...... ...170.........180..... ....190.......
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Query Sequence  P. ACVLQMRGLGALLLSHNCLSELPEA. LGALPALTFLTVTHNRLQT. . LPPALGALSTLQ. . . . . . . . . . . . . . . . . . .
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Template Conservation      
  
  
  
 

 
 
  
          
  
 
                   
                    
Template Sequence  ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV
Template Known Secondary structure 
TTTTTT
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TTS



STT
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GGGGG
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GGGG
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   118.120.........130.........140.........150.........160.........170.........180.........190.......
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL
Template Known Secondary structure  T
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TTTTTT
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   198.200.........210.........220.........230.........240.........250.........260.........270.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT
Template Known Secondary structure  GGGGGSTTS
STTTTGGGTT
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S

B

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SS
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   278.280.........290.........300.........310.........320.........330.........340.........350.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM
Template Known Secondary structure  S
BS

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B
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SS

BT
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S
ST
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TTSS
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   358.360.........370.........380.........390.........400.........410.........420.........430.......
 
   198.200...... ...210.........220.........230. ........240.........250..... ....260
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Query Sequence  . . . . . . . . . . . . . RLDLSQNLL. DTLPPEIGGLGSLLELNLASNRLQS. . LPASLAGLRSLRLLVLHSNLLASV. PADLA
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Template Conservation             
                       
  
 
                
  
  
 

 
 
  
    
 
Template Sequence  SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN
Template Known Secondary structure  TTS
TTTT
TT


TTS



TTTTTT
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TT
GGG
S

TT
TT


TTS



TTTTT
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   438.440.........450.........460.........470.........480.........490.........500.........510.......
 
   261........270.........280 .........290.......
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Query Sequence  RLPLLTRLDLRDNQLRDLPP. . . . ELLDAPFVRLQGNPLGE
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Template Conservation   
  
  
 

 
 
  
       
  
  
 
  

  
Template Sequence  SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
Template Known Secondary structure  T
TT



SS

S


TTTTTT
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SS
B

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   518.520.........530.........540.........550........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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