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Job DescriptionQ9HB75
Confidence99.65%DateWed May 9 17:48:56 BST 2012
Rank60Aligned Residues205
% Identity23%Templatec1h6uA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:internalin h; PDBTitle: internalin h: crystal structure of fused n-terminal2 domains.
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   60.........70.........80.........90.........100.........110.........120.........130.........
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Query Sequence  QLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLET
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Template Sequence  ALANAIKIAAGKSNVTDTVTQA. . . . . . DLDGITTLSAFGTGVTTIEG. . . . . . . . . . . . . VQYLNNLIGLELKDNQITD
Template Known Secondary structure  TT
SSTTS
......T


TTS




TT.............GGG
TT



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   52.......60.........70... ......80.........90... ......100.........110..
 
   140.........150.........160.... .....170.........180.........190........
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Query Sequence  LPACVLQMRGLGALLLSHNCLSELP. . . . . . . . . . . . . . . . . . . . . EALGALPALTFLTVTHNRLQTLPPALGALSTLQR
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Template Sequence  LAP. LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI. SPLAGLTNLQY
Template Known Secondary structure 
GG.GTT

S



S


S

GGGTT
TT


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GGGTT
TT



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.GGGGG
TT

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   113.. ....120.........130.........140.........150.........160.........170......... 180.........190
 
   199200.........210.........220.........230.........240.........250.........260.........270........
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Query Sequence  LDLSQNLLDTLPPEIGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDL
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Template Sequence  LSIGNAQVSDL. TPLANLSKLTTLKADDNKISDISP. LASLPNLIEVHLKNNQISDVSP. LANTSNLFIVTLTNQTITNQ
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.GGGTT
TT



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GG.GGG
TT


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B
GG.GTT
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   191........200. ........210.........220..... ....230.........240....... ..250.........260.......
 
   279280........
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Query Sequence  PPELLDAPFV
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Template Conservation         
  
Template Sequence  PVFYNNNLVV
Template Known Secondary structure 


S
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   268.270.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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