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Job Description | Q9HB75 | Confidence | 98.57% | Date | Wed May 9 17:48:56 BST 2012 |
Rank | 103 | Aligned Residues | 135 |
% Identity | 27% | Template | c1kooD_ |
PDB info |
PDB header:rna binding protein | Chain: D: PDB Molecule:tip associating protein; |
PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor
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Resolution | 3.80 Å |
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132 | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
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Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
L | S | F | N | S | L | E | T | L | P | A | C | V | L | Q | M | . |
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R | G | L | G | A | L | L | L | S | H | N | C | L | S | E | L | P | E | A | L | G | A | L | P | A | L | T | F | L | T | V | T | H | N | R | L | Q | T | L | P | P | A | L | G | A | L | S | T | L | Q | R | L | D | L | S | Q | N | L | L | D | T | L |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | K | P | E | Q | V | E | Q | L | K | L | I | M | S | K | R | Y | D | G | S | Q | Q | A | L | D | L | K | G | L | R | S | D | P | D | . |
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L | V | A | Q | N | I | D | V | V | L | N | R | R | S | S | M | A | A | T | L | R | I | I | E | E | N | I | P | E | L | L | S | L | N | L | S | N | N | R | L | Y | R | L |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
204 | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | |
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. | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
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. | 260 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
P | P | E | . |
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I | G | G | L | G | S | L | L | E | L | N | L | A | S | N | R | L | Q | S | L | P | A | . |
S | L | A | G | L | R | S | L | R | L | L | V | L | H | S | N | L | L | A | S | V | P | A | D | . |
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L | A | R | L | P | L | L | T | R | L | D |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
D | D | M | S | S | I | V | Q | K | A | P | N | L | K | I | L | N | L | S | G | N | E | L | K | S | E | R | E | L | D | K | I | K | G | L | K | L | E | E | L | W | L | D | G | N | S | L | C | D | T | F | R | D | Q | S | T | Y | I | S | A | I | R | E | R | F | P | K | L | L | R | L | D |
Template Known Secondary structure |   |
G | G | G | G | G | G | T | T | T |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
281 | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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