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Job DescriptionQ9HB75
Confidence99.70%DateWed May 9 17:48:56 BST 2012
Rank55Aligned Residues252
% Identity20%Templatec3o53A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:protein lrim1; PDBTitle: crystal structure of lrim1 leucine-rich repeat domain
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50.........60.........70.........80.........90.........100.........110.....
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Query Sequence  NRLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALT
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Template Sequence  NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA. . . . PFTKLELLNLSSNVLYETLDLESLSTLR
Template Known Secondary structure  TTS

TTTTTGGG
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T....T
TT


TTS

TT
TT

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   30.........40.........50.........60.........70....... ..80.........90.........100.....
 
   116. ..120.........130.........140.........150.........160.. ...
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Query Sequence  NL. . . . . . . . . . . . . . . . . . . . . . . . . . . . PAGLSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSE. . LPE
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Template Conservation                                                                                  
Template Sequence  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE
Template Known Secondary structure 

SS
TT



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S


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SGGGB
TGGGSS
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GGG
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   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  ALGALPALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQSLPASLAGLRSLRLL
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Template Sequence  LAASSDTLEHLNLQYNFIYDV. KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF
Template Known Secondary structure  GGGGTTT


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TT



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GGGGGGTT
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TT

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   186...190.........200...... ...210.........220.........230.........240.........250.........260....
 
   246...250.... .....260.........270......... 280.........290...
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Query Sequence  VLHSNLLAS. VPADLARLPLLTRLDLRDNQLRDLP. . . PELLDAPFVRLQGN
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Template Sequence  DLRGNGFHCGTLRDFFS. KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA
Template Known Secondary structure 
TT


B.T
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   265....270.........280. ........290.........300.........310.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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