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Job DescriptionQ9HB75
Confidence99.86%DateWed May 9 17:48:56 BST 2012
Rank24Aligned Residues278
% Identity28%Templatec2z81A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
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Query Sequence  PELEAAAAAGDASEDSDAGSRALPFLGGNRLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQ
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Template Conservation    
   
  
 

 
 
  
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Template Sequence  SGLTAAMKSLDLSFNKITYI. . GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG. . . .
Template Known Secondary structure  S


TT



SS


..
SSTTSS
TT


TTS



TTTTTT
TT


TTS


S

T....
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   48.50.........60....... ..70.........80.........90.........100.........110.........120.
 
   88.90.........100...
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Query Sequence  SLSCLRSLVLKGGQRR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation   
  
  
 

 
             
  
  
 
                   
  
                      
Template Sequence  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH
Template Known Secondary structure  T
TT


TT


SSS
SS
S
TT
TT

SSS


TTTTTT

TT


TTTTTT
S
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   122.......130.........140.........150.........160.........170.........180.........190.........200.
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                  
                                               
Template Sequence  HLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE
Template Known Secondary structure 
SBSTTSTTTBSS
B
TT





SS







S
GGGGG
TT

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   202.......210.........220.........230.........240.........250.........260.........270.........280.
 
   104.....110.........120 ......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DTLGACLRGALTNLPAG. LSGLAH
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Template Conservation                                                          
  
                    
Template Sequence  VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS
Template Known Secondary structure  S


S




TTT




TT

S
B
S
GGGS



STT

SS






TT
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   282.......290.........300.........310.........320.........330.........340.........350.........360.
 
   127..130......... 140.........150.........160.. .......170.........180.........190.........
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Query Sequence  LAHLDLSFNSLET. . . . LPACVLQMRGLGALLLSHNCLSE. . . LPEALGALPALTFLTVTHNRLQTLPPALGALSTLQRL
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Template Conservation 
  
                       
  
                      
                      
   
Template Sequence  LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL
Template Known Secondary structure 



SS


T
TTSSTT


TTS



GGG
TT


TT






S




TT

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   362.......370.........380.........390.........400.........410.........420.........430.........440.
 
   200.........210.........220.........230.........240.........250.........260.........270.........
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Query Sequence  DLSQNLLDTLPPEIGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLP
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Template Conservation             ..      
  
 

 
 
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Template Sequence  NLSSTGIRVVK. . TCIPQTLEVLDVSNNNLDSFSL. . . FLPRLQELYISRNKLKTLPDA. SLFPVLLVMKISRNQLKSVP
Template Known Secondary structure 
TTS

S


..TTS
TT
S

SS

S



...

TT



SS

SS


G.GG
TT



SS





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   442.......450.. .......460.........470.... .....480.........490..... ....500.........510.....
 
   280 .........290.......
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Query Sequence  P. . . . ELLDAPFVRLQGNPLGE
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Template Conservation        
  
  
 
  

  
Template Sequence  DGIFDRLTSLQKIWLHTNPWDC
Template Known Secondary structure  TTGGGG
TT



SS
B

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   516...520.........530.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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