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Job DescriptionQ9HB75
Confidence99.91%DateWed May 9 17:48:56 BST 2012
Rank13Aligned Residues214
% Identity30%Templatec3a79A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   60.........70.........80.........90.........100.........110.........120.........130.........
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Query Sequence  QLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLET
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Template Conservation   
      
 
   
  

  
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Template Sequence  SCDASGVCDGRSRSFTSIPSGL. . . . . . . TAAMKSLDLSFNKITYIGHGD. . . . . . . . . . . LRACANLQVLILKSSRINT
Template Known Secondary structure 


SSS

SS

SSS
S

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TT
S

SS



SST...........TSS
TT
S
TTS


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   2930.........40.........50 .........60.........70. ........80.........90
 
   140 .........150.........160...... ...170.........180......... 190.......
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Query Sequence  L. PACVLQMRGLGALLLSHNCLSELPEA. LGALPALTFLTVTHNRLQTLPPA. . LGALSTLQ. . . . . . . . . . . . . . . . . .
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Template Conservation 
    
  
  
  
 

 
 
  
       
  
  
 

 
                
  
 
              
Template Sequence  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF
Template Known Secondary structure 
TTTTTT
TT



SS


S

TTSSTT
TT


TT


SSS
SS
SSTT
TT

SSS


SSTT
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation       
                                                         
                
Template Sequence  AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP
Template Known Secondary structure  TT

TT


TTTTTS


SBGGGTTTTBSS
B
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   171........180.........190.........200.........210.........220.........230.........240.........250
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST
Template Known Secondary structure 

SS
GGGGGT
TT


S
S
S




TTTT

S
B
TTGGG



GG
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   251........260.........270.........280.........290.........300.........310.........320.........330
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation         
  
                    
  
                       
  
                  
Template Sequence  VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL
Template Known Secondary structure  GTTTTSS

SS






TT


TTS


T
TTS
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TTS



GG
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   331........340.........350.........360.........370.........380.........390.........400.........410
 
   198.200.........210.........220.........230.........240........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLH
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Template Conservation      
                      
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Template Sequence  TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK. . TCIPQTLEVLDVSNNNLDSFSL. . . FLPRLQELYIS
Template Known Secondary structure  G
TT



S






S




TT


TT






..TTS
TT
S

SS

S



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TT



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   411........420.........430.........440.........450.. .......460.........470.... .....480.....
 
   249250.........260.........270.........280 .........290.......
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Query Sequence  SNLLASVPADLARLPLLTRLDLRDNQLRDLPP. . . . ELLDAPFVRLQGNPLGE
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Template Conservation   
 
  
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Template Sequence  RNKLKTLP. DASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
Template Known Secondary structure  SS

SS

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TTS
TT



SS

S


SS
TTS
TT



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   486...490... ......500.........510.........520.........530.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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