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Job DescriptionQ9HB75
Confidence99.94%DateWed May 9 17:48:56 BST 2012
Rank7Aligned Residues243
% Identity25%Templatec3ojaA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.........90.........100........
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Query Sequence  ALPFLGGNRLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGA
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Template Sequence  AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA. . . . PFTKLELLNLSSNVLYETLD.
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TTS

TTTTTSTTGGG



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GGGGT....T
TT


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   23......30.........40.........50.........60.........70....... ..80.........90.......
 
   109110.........120.........130.........140.........150.........160.........170.........180........
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Query Sequence  CLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEALGALPALTFLTVTHNRLQTLPP
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Template Sequence  . . . . . . . . . . . . LESLSTLRTLDLNNNYVQELL. . . . VGPSIETLHAANNNISRVS. . CSRGQGKKNIYLANNKITMLRD
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TT
TT



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TT



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SS


SS


SGGG
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   98.100.........110........ .120.........130....... ..140.........150.........
 
   189190.........200.........210.. .......220.........230.........240.........250.........260.....
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Query Sequence  . ALGALSTLQRLDLSQNLLDTLPPE. . IGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADLARLPLL
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Template Sequence  LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV. FAKLKTLDLSSNKLAFMGPEFQSAAGV
Template Known Secondary structure  B
GGGGSS
TTS


GGGGGGGTTT


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TT



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GGGGGGTT
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   160.........170.........180.........190.........200.........210. ........220.........230........
 
   266...270.........280... ......290.....
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Query Sequence  TRLDLRDNQLRDLPPELL. . . DAPFVRLQGNPL
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Template Sequence  TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF
Template Known Secondary structure  S
TTS



TT



TT


TT

B
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   239240.........250.........260.........270.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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