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Job DescriptionQ9HB75
Confidence99.83%DateWed May 9 17:48:56 BST 2012
Rank33Aligned Residues194
% Identity28%Templatec3v44A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 5b and variable lymphocyte receptor b.61 PDBTitle: crystal structure of the n-terminal fragment of zebrafish tlr5
Resolution2.83 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   100.........110.........120.........130.........140... ......150.........160... ......170......
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Query Sequence  GQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPAC. VLQMRGLGALLLSHNCLSEL. . PEALGALPALTFL
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Template Sequence  CSVIGYNAICINRGLHQVPE. . . LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL
Template Known Secondary structure 
TT
TTS

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TTTSSS
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   25....30.........40.... .....50.........60.........70.........80.........90.........100.
 
   177..180........ .190.........200.........210.......
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Query Sequence  TVTHNRLQTLPP. ALGALSTLQRLDLSQNLLDTLPPEIGGLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN
Template Known Secondary structure 
TT
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TTTTTT
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TSSTTTT
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GGGGG
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TT
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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                                                  
Template Sequence  KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL
Template Known Secondary structure 
BS


TTTTGGGTT

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STT
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TTTT

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TTT

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   182.......190.........200.........210.........220.........230.........240.........250.........260.
 
   218.220.........230..... ....240.........250..... ....260....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SLLELNLASNRLQSLPAS. LAGLRSLRLLVLHSNLLASV. PADLARLPL
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Template Conservation                                                          
  
 

 
            
  
Template Sequence  ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH
Template Known Secondary structure 
TT
TT
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SSSTT




TTTTGGGGGS



TTS



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TT


TTS



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TT
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   262.......270.........280.........290.........300.........310.........320.........330.........340.
 
   265....270.........280 .........290......
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Query Sequence  LTRLDLRDNQLRDLPP. . . . ELLDAPFVRLQGNPLG
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Template Sequence  LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD
Template Known Secondary structure 



SS

S


TTTTTT
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B
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   342.......350.........360.........370.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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