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Job DescriptionQ9HB75
Confidence99.59%DateWed May 9 17:48:56 BST 2012
Rank70Aligned Residues218
% Identity24%Templatec2z62A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90.........100.........110.........120.........130.........140
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Query Sequence  LLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETL
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Template Sequence  VPNITY. QCMELNFYKIPDNL. . . . . . . PFSTKNLDLSFNPLRHLGSYS. . . . . . . . . . . FFSFPELQVLDLSRCEIQTI
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   33..... .40.........50.. .......60.........70... ......80.........90...
 
   141. .......150.........160.. .......170.........180........ .190.........200...... ...210.....
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Query Sequence  PA. CVLQMRGLGALLLSHNCLSE. LPEALGALPALTFLTVTHNRLQTLPP. ALGALSTLQRLDLSQNLL. . DTLPPEIGG
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Template Sequence  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN
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GGGGG
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   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   216...220.........230... ......240.........250.........260.........270.........280 ......
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Query Sequence  LGSLLELNLASNRLQSLP. . . . . ASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPP. . . . ELLDAP
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Template Sequence  LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ
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GGGGT
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   174.....180.........190.........200.........210.........220.........230.........240.........250...
 
   287..290.......
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Query Sequence  FVRLQGNPLGE
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Template Sequence  KIWLHTNPWDC
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   254.....260....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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