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Job DescriptionQ9HB75
Confidence99.85%DateWed May 9 17:48:56 BST 2012
Rank27Aligned Residues198
% Identity28%Templatec2omwA_
PDB info PDB header:cell invasion/cell adhesionChain: A: PDB Molecule:internalin-a; PDBTitle: crystal structure of inla s192n y369s/mec1 complex
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   60.........70.........80.........90.........100.........110.........120.........130.........
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Query Sequence  QLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLET
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Template Sequence  ALAEKMKTVLGKTNVTDTVSQT. . . . . . DLDQVTTLQADRLG. . . . . . . . . . . . IKSID. GVEYLNNLTQINFSNNQLTD
Template Known Secondary structure  TT
S
TTS
......TT


TTS
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T.TGGG
TT



SS



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   52.......60.........70... ......80....... ..90.. .......100.........110..
 
   140.........150.........160.........170.........180.........190.......
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Query Sequence  LPACVLQMRGLGALLLSHNCLSELPEALGALPALTFLTVTHNRLQTLPPALGALSTLQ. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ITP. LKNLTKLVDILMNNNQIADITP. LANLTNLTGLTLFNNQITDI. DPLKNLTNLNRLELSSNTISDISALSGLTSLQ
Template Known Secondary structure 
GG.GTT
TT



SS




GG.GTT
TT
S

SS




.GGGTT
TT
S


GGGTT
TT
S
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   113.. ....120.........130....... ..140.........150....... ..160.........170.........180.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                                                  
Template Sequence  QLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL
Template Known Secondary structure  S



GGGTT
TT


TTS




GGGGG
TT
S

SS




GGGGG
TT


TTS




GGG
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   190.........200.........210.........220.........230.........240.........250.........260.........
 
   198.200....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RLDLSQN
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Template Conservation                                                                         
  
     
Template Sequence  ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN
Template Known Secondary structure  GG
TT
S

SS




GGGTT
TT
S

SS




GGGTT
TT
S

SS




GGGGG
TT
S

SS
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   270.........280.........290.........300.........310.........320.........330.........340.........
 
   205....210.........220.........230.........240.........250.........260.........270.........280..
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Query Sequence  LLDTLPPEIGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPPEL
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Template Sequence  NISDI. SPVSSLTKLQRLFFSNNKVSDVSS. LANLTNINWLSAGHNQISDLTP. LANLTRITQLGLNDQAWTNAPVNY
Template Known Secondary structure 




.GGGTT
TT
S

SS




GG.GGG
TT



SS


B
GG.GTT
TT








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   350.... .....360.........370........ .380.........390.........400 .........410.........420....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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