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Job DescriptionQ9HB75
Confidence99.89%DateWed May 9 17:48:56 BST 2012
Rank19Aligned Residues256
% Identity32%Templatec3g06A_
PDB info PDB header:ligaseChain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50.........60.........70.........80........
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Query Sequence  ELEAAAAAGDASEDSDAGSRALPFLGGNRLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQS
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Template Sequence  AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP. . . . . . AHITTLVIPDNNLT. . . . . . . . SLPAL
Template Known Secondary structure  T

GGG




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   175....180.........190.........200.........210.........220. ........230..... ....240
 
   8990.........100.. .......110.........120.........130.........140.........150.........160
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Query Sequence  LSCLRSLVLKGGQR. . . . . . . . RDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCL
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Template Sequence  PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP. . . ALPSGLCKLWIFGNQLTSLPVL. . . PPGLQELSVSDNQL
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TT


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   241........250.........260.........270........ .280.........290.........300 .........310....
 
   161........170.........180.........190.........200.........210........ .220...
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Query Sequence  SELPEALGALPALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGS. . . . . . . . . . . . . . . . . LLELN
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Template Sequence  ASLPALPSELCKLWAYNNQLTSLPMLPS. . . . . . GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELI
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TT



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T......T



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   315....320.........330.........340.. .......350.........360.........370.........380........
 
   224.....230.........240.........250.........260.........270.........280 .........290......
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Query Sequence  LASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPP. . . ELLDAPFVRLQGNPLG
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Template Sequence  VSGNRLTSLPV. . . LPSELKELMVSGNRLTSLPMLP. . . SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS
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   389390......... 400.........410.........420. ........430.........440.........450........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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