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Job DescriptionQ9HB75
Confidence99.84%DateWed May 9 17:48:56 BST 2012
Rank28Aligned Residues187
% Identity30%Templatec3rg1I_
PDB info PDB header:immune systemChain: I: PDB Molecule:cd180 molecule; PDBTitle: crystal structure of the rp105/md-1 complex
Resolution2.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   100.........110.........120.........130.........140... ......150.........160... ......170.......
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Query Sequence  GQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPAC. VLQMRGLGALLLSHNCLSEL. PEALGALPALTFLT
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Template Conservation 
      

 
   
  

  
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Template Sequence  EKEGNRTYNCENLGLREIPDTLP. . NTTEVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIV
Template Known Secondary structure  TTT
TTS

SS

TTS
..TT



S


S
TTTTSS
TT
S
TTS



TTTTTT
TT

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   30.........40.........50.. .......60.........70.........80.........90.........100.......
 
   178.180.........190.......
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Query Sequence  VTHNRLQTLPPALGALSTLQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHY
Template Known Secondary structure 
TT




TTTT


S



TTS



GGGS

TT
TT
S
TTS







TT


TT



SS


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   108.110.........120.........130.........140.........150.........160.........170.........180.......
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  ISRKDTNSLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSAT
Template Known Secondary structure 
TTTT
SS
TT




TTTT
STT
TT
S
TTT




TTS



B
GGG
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   188.190.........200.........210.........220.........230.........240.........250.........260.......
 
   198.200.........210.........220.........230.. .......240..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQSL. PASLAGLRSL
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Template Conservation                                                         
  
 
  
 
          
  
Template Sequence  FEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSL
Template Known Secondary structure  GGGGGGS
TT

BSS

GGGGTT
TT


TT


S


S

STTTT


TT


SBGGGG
GGG
TT
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   268.270.........280.........290.........300.........310.........320.........330.........340.......
 
   243......250.... .....260.........270.........280.........290.......
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Query Sequence  RLLVLHSNLLAS. . VPADLARLPLLTRLDLRDNQLRDLPPELLDAPFVRLQGNPLGE
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Template Sequence  RDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI. . . . . . . . . LQYLNLSYNEPLE
Template Known Secondary structure 


S
SS

B

SSTTTT
TT


TTS

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S




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   348.350.........360.........370.........380.. .......390.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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