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Job DescriptionQ9HB75
Confidence99.78%DateWed May 9 17:48:56 BST 2012
Rank39Aligned Residues176
% Identity29%Templatec3bz5A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:internalin-j; PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   87..90.........100.........110.........120.........130.........140.........150.........160......
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Query Sequence  QSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEA
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Template Sequence  EQLATLTSLDCHNSSITDMTG. . . . . . . . . . . . . IEKLTGLTKLICTSNNITTLD. . LSQNTNLTYLACDSNKLTNLD. .
Template Known Secondary structure  TT



SS




TT.............GGG
TT
S

SS

S


..
TT
TT
S

SS

S


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   90.........100.........110 .........120.........130. ........140.........150..
 
   167..170.........180.........190.........200.........210..
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Query Sequence  LGALPALTFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VTPLTKLTYLNCDTNKLTKLD. . VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSF
Template Known Secondary structure 
TT
TT



SS

S


..
TT
TT


TTS

S



TT
TT


TT
S






TT
TT



S
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   153......160.........170... ......180.........190.........200.........210.........220.........230
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTL
Template Known Secondary structure  S






TT
TT



SS

S



TT
TT
S

SS

S



TT
TT
S

SS

S



TT
TT

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   231........240.........250.........260.........270.........280.........290.........300.........310
 
   213......220.........230.........240.........250.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADL
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Template Sequence  HCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD. . LSQNPKLVYLYLNNTELTELD. . V
Template Known Secondary structure 
TT


S



TT
TT


TT
TT





TT
TT


TT


S


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TT
TT


TT


S


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   311........320.........330.........340.........350.........360.... .....370.........380..... .
 
   260.........270.........280......
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Query Sequence  ARLPLLTRLDLRDNQLRDLPPELLDAP
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Template Sequence  SHNTKLKSLSCVNAHIQDFSS. VGKIP
Template Known Secondary structure  TT
TT
S

SS


B
TT.GGGSS
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   387..390.........400....... ..410..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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