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Job DescriptionQ9HB75
Confidence99.83%DateWed May 9 17:48:56 BST 2012
Rank32Aligned Residues225
% Identity23%Templatec1ltxA_
PDB info PDB header:transferase/protein bindingChain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   37..40.........50.........60.........70.........80.........90.........100.........110......
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Query Sequence  RLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTN
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Template Sequence  LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS. . . . . ATDEQLFRCELSVEK. . . . . . . . . . . . STV
Template Known Secondary structure 

GGGTSSSSSTTT

TT
S

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   301........310.........320.........330.........340..... ....350.........360 ...
 
   117..120.........130..... ....140.........150.........160...... ...170...
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Query Sequence  LPAGLSGLAHLAHLDLSFN. SLETLPACVLQMRGLGALLLSHNCLSELPEA. . . . . . . . . . . . . . . . . . . . . . LGALPAL
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Template Sequence  LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV
Template Known Secondary structure  STT

TTTT
GGGT
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   364.....370.........380.........390.........400.........410.........420.........430.........440...
 
   174.....180.........190.........200.........210.........220.........230.........240.........250...
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Query Sequence  TFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLA
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Template Sequence  RVLHLAHKDLTVLCH. LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD. GVANLPRLQELLLCNNRLQ
Template Known Secondary structure  S

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.GGG
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B

GGGGG
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B
G.GGSS
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   444.....450........ .460.........470.........480.........490.........500.. .......510.........520.
 
   254.. ...260.........270.........280
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Query Sequence  SVP. . ADLARLPLLTRLDLRDNQLRDLPP
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Template Sequence  QSAAIQPLVSCPRLVLLNLQGNSLCQEEG
Template Known Secondary structure  SGGGGGGGGG
TT


TTSGGGGSTT
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   522.......530.........540.........550
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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