Return to main results Retrieve Phyre Job Id

Job DescriptionQ9HB75
Confidence99.57%DateWed May 9 17:48:56 BST 2012
Rank72Aligned Residues196
% Identity27%Templatec2z66A_
PDB info PDB header:immune systemChain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4; PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.. .......150.........160.. .......170...
Predicted Secondary structure 




































.













...







Query SS confidence 












































.



















. . .










Query Sequence  KGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPA. CVLQMRGLGALLLSHNCLSE. . . LPEALGALPAL
Query Conservation    
           
 
  

     
  
  



 
 
  

 . 
  
  
  
 
  
 
  ...

  
  
  
Alig confidence 























..


















.



















...










Template Conservation    
 
    
 

   

 

   ..   
  
 

 
 
  
    
  
  
  
 

 
 
               
Template Sequence  SRCSCSGTEIRCNSKGLTSVPTGI. . PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL
Template Known Secondary structure  TT
TT

SS

SS

S

..
TT



SS





TTTTTT
TT
S

SS


S
S

Template Predicted Secondary structure 


















..










































Template SS confidence 















































































   26...30.........40......... 50.........60.........70.........80.........90.........100...
 
   174.....180.........190.........200.........210..
Predicted Secondary structure 


























.........................................
Query SS confidence 






































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  TFLTVTHNRLQTLPPALGALSTLQRLDLSQNLLDTLPPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    
 

 
 
  

     
  
  
 

 
 
  

  .........................................
Alig confidence 






































.........................................
Template Conservation    
                                                                             
Template Sequence  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN
Template Known Secondary structure 


S
ST
TT


TTSSSTTTTTTTT
TT


TTS


STTTTTT
TT


TT
Template Predicted Secondary structure 















































































Template SS confidence 















































































   402.......410.........420.........430.........440.........450.........460.........470.........480.
 
   213......220.........230.. .......240.........250..... ....260.........270.........280
Predicted Secondary structure  ..........














.















.













Query SS confidence  . . . . . . . . . .



















.






















.
























Query Sequence  . . . . . . . . . . IGGLGSLLELNLASNRLQSL. PASLAGLRSLRLLVLHSNLLASV. PADLARLPLLTRLDLRDNQLRDLPP
Query Conservation  ..........
  
  
  
 

 
 
  
.
  
  
  
  
 

 
 
  
.
  
  
  
  



 
 
  

 
Alig confidence  ..........



















.






















.
























Template Conservation                                          
  
         
          
  
 
  
       
Template Sequence  SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK
Template Known Secondary structure  GGG
S

TT
TT


TTS



TTTTTT
TT


TTS

SB

SGGGTT
TT


TTS


B
SS
Template Predicted Secondary structure 










































































Template SS confidence 















































































   482.......490.........500.........510.........520.........530.........540.........550.........560.
 
   281 ........290.....
Predicted Secondary structure  .....








Query SS confidence 
. . . . .













Query Sequence  E. . . . . LLDAPFVRLQGNPL
Query Conservation   .....   
  
 
 



Alig confidence 
.....













Template Conservation           
  
 
  


Template Sequence  QELQHFPSSLAFLNLTQNDF
Template Known Secondary structure  SS




TT


TT

Template Predicted Secondary structure 











Template SS confidence 



















   562.......570.........580.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions