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Job DescriptionQ9HB75
Confidence99.84%DateWed May 9 17:48:56 BST 2012
Rank29Aligned Residues236
% Identity33%Templatec3v47B_
PDB info PDB header:immune systemChain: B: PDB Molecule:toll-like receptor 5b and variable lymphocyte receptor b.61 PDBTitle: crystal structure of the n-tetminal fragment of zebrafish tlr5 in2 complex with salmonella flagellin
Resolution2.47 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70...... ...80.........90.........100.
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Query Sequence  SDAGSRALPFLGGNRLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQ. LLEATLAQLPQSLSCLRSLVLKGGQ
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Template Sequence  INRGLHQVPELPAHVNYVDL. . . SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR. . . . GLSSLIILKLDYNQ
Template Known Secondary structure  TTS

SS




TT


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SS



TTTTTT
TT





STT

TTTTT....T
TT


TT
T
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   35....40.........50.... .....60.........70.........80.........90... ......100.......
 
   102.......110.........120.........130...
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Query Sequence  RRDTLGACLRGALTNLPAGLSGLAHLAHLDLS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FLQLETGA. . . . . . . . . . . FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL
Template Known Secondary structure  T

TTT...........TTT
TT


TTS


TSSTTTT
TT



SS


S



GGGGG
TT

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   108.110..... ....120.........130.........140.........150.........160.........170......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT
Template Known Secondary structure 
TT

BS


TTTTGGGTT

TT
B
TT
STT
S


TTTT

TTS


TTT
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   177..180.........190.........200.........210.........220.........230.........240.........250......
 
   134.....140.........150.........160.. .......170.........180........ .190
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . FNSLETLPACVLQMRGLGALLLSHNCLSE. LPEALGALPALTFLTVTHNRLQTLPP. AL
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Template Sequence  KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF
Template Known Secondary structure 

TT
TTTS

TT

SS



TTTTGGGTTS




SS



TTTTTT
TT


TTS



TTTT
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   257..260.........270.........280.........290.........300.........310.........320.........330......
 
   191........200.........210. ........220.........230.. .......240.........250........ .260.......
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Query Sequence  GALSTLQRLDLSQNLLDTLPP. EIGGLGSLLELNLASNRLQSL. PASLAGLRSLRLLVLHSNLLASVPAD. LARLPLLTR
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Template Conservation       
  
 
                  
  
 

 
 
  
       
  
  
 

 
 
  
       
  
  
Template Sequence  WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK
Template Known Secondary structure  TT
TT



SS



GGGGTT
TT



SS



TTTTTT
TT



SS

S


TTTTTT
TT

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   337..340.........350.........360.........370.........380.........390.........400.........410......
 
   268.270......
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Query Sequence  LDLRDNQLR
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Template Sequence  IWLHTNPWD
Template Known Secondary structure 

SS
B
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   417..420.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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