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Job DescriptionQ9HB75
Confidence99.90%DateWed May 9 17:48:56 BST 2012
Rank16Aligned Residues214
% Identity32%Templatec2z7xB_
PDB info PDB header:immune systemChain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.........110.........120.
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Query Sequence  LYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGL
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Template Sequence  LVDRSKNGLIHVPKDLS. . . QKTTILNISQNYISELWTSDIL. . . . SLSKLRILIISHNRIQYLDISV. . . . . . . . . . . F
Template Known Secondary structure 
TTS

SS


S

...TT
S

SS





T....T
TT



SS


GGG...........G
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   28.30.........40.... .....50.........60...... ...70.........80........ .
 
   122.......130.........140.........150.........160.... .....170.........180.........190.......
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Query Sequence  SGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELP. . EALGALPALTFLTVTHNRLQTLPPALGALSTLQ. .
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Template Sequence  KFNQELEYLDLSHNKLVKIS. . CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV
Template Known Secondary structure  TT
TT



SS


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S

SS

SS



GGGGG
TT

SS

GGGGGGGTTS
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   90.........100......... 110.........120.........130.........140.........150.........160.......
 
  
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Template Sequence  LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS
Template Known Secondary structure 
TTTTSS

TTTTTT



SSS









TT
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STTTTGGGG
TT

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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
  
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Query Conservation  ................................................................................
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Template Sequence  NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMN
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S







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TT

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   248.250.........260.........270.........280.........290.........300.........310.........320.......
 
  
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Query Conservation  ................................................................................
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Template Sequence  IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ
Template Known Secondary structure 
SSS







SS






SS


TTTTTT



SS



SS


BTT
TT



S
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   328.330.........340.........350.........360.........370.........380.........390.........400.......
 
   198.200.........210.........220.........230.........240.........250..... ..
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Query Sequence  . . . . . . . . . . . . . . . . . . . RLDLSQNLLDTLPPEIGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASV. PA
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Template Sequence  NSVSYDEKKGDCSWTKSLLSLNMSSNILTDT. IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG
Template Known Secondary structure  S

B

GGG
S



TT



SS


GG.GGGS

TT



SS





GGGGG
TT



SS





TT
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   408.410.........420.........430........ .440.........450.........460.........470.........480......
 
   258.260.........270......
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Query Sequence  DLARLPLLTRLDLRDNQLR
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Template Conservation      
  
  
 

 
   
Template Sequence  IFDRLTSLQKIWLHTNPWD
Template Known Secondary structure  TTTT
TT



SS
B
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   487..490.........500.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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