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Job DescriptionQ9HB75
Confidence43.56%DateWed May 9 17:48:56 BST 2012
Rank136Aligned Residues67
% Identity12%Templatec2aivA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116; PDBTitle: multiple conformations in the ligand-binding site of the2 yeast nuclear pore targeting domain of nup116p
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   508.510.........520.........530...... ...540........ .550.........560........
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Query Sequence  GEPEAAVSPLLCLSQSGPPSFLQPVTVQL. . . . PLPSGITGLSLD. . . . . . . . . . . . . . . RSRLHLLYWAPPAATWDDIT
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Template Sequence  EPKTCIIYANLPNRPKRGEGINVRARITCFNCYPVDKSTRKPIKDPNHQLVKRHIERLKKNPNSKFESYDADSGTY. . . .
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   63......70.........80.........90.........100.........110.........120.........130........
 
   569570.........580.........590
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Query Sequence  AQVVLELTHLYARFQVTHFSWY
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Template Sequence  . . . . . . . . . . . . VFIVNHAAEQ
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   139140........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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