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Job DescriptionQ9HB75
Confidence99.45%DateWed May 9 17:48:56 BST 2012
Rank85Aligned Residues249
% Identity21%Templatec1k5dL_
PDB info PDB header:signaling protein/signaling activatorChain: L: PDB Molecule:ran gtpase activating protein 1; PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50.........60.........70.........80.........90.........100.........110.......
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Query Sequence  LSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNL
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Template Sequence  KSLKLDAITTEDEKSV. FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE. IPEALRLL
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SGG.G
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   910.........20.... .....30.........40.........50.........60.........70........ .80......
 
   118.120.........130......... 140.........150.........160. ........170........
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Query Sequence  PAGLSGLAHLAHLDLSFNSLET. . . . . LPACVLQMRGLGALLLSHNCLS. . . . . . . . . . . . . . ELPEALGALPALTFLTV
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Template Sequence  LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC
Template Known Secondary structure  TT
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SGGG
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   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   179180..... ....190.........200.........210.. .......
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Query Sequence  THNRLQT. . . . . LPPALGALSTLQRLDLSQNLLDTLPPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IGGLGSL
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Template Sequence  GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL
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TGGG
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TGGG
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   167..170.........180.........190.........200.........210.........220.........230.........240......
 
   220.........230. ........240.........250.... ..... 260.........270.........280......
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Query Sequence  LELNLASNRLQS. . . . . . . LPASLAGLRSLRLLVLHSNLLAS. . . . . VPADL. ARLPLLTRLDLRDNQLRDLPPELLDAP
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Template Sequence  RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR
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TT




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   247..250.........260.........270.........280.........290.........300.........310.........320......
 
   287.
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Query Sequence  FV
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Template Sequence  EV
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   327.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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