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Job DescriptionQ9HB75
Confidence99.91%DateWed May 9 17:48:56 BST 2012
Rank12Aligned Residues190
% Identity53%Templatec3a79B_
PDB info PDB header:immune systemChain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   104.....110.........120.........130.........140 .........150.........160... ......170.........180.
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Query Sequence  DTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETL. PACVLQMRGLGALLLSHNCLSEL. PEALGALPALTFLTVTHN
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Template Sequence  ESMVDYSNRNLTHVPKDL. . PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN
Template Known Secondary structure 


TTS


S

TTS..
TT



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GGGTTT
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TTTTTT
TT


TTS
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   33......40.........50 .........60.........70.........80.........90.........100.........110
 
   182.......190.........200.........210 .........220.........230......
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Query Sequence  RLQTLPPALGALSTLQRLDLSQNLLDTLP. . PEIGGLGSLLELNLASNRLQSLPASL. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RLQNIS. . CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET
Template Known Secondary structure 



..S


TT
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GGGGG
TT


SB

TTTTGGGTTS
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   111..... ...120.........130.........140.........150.........160.........170.........180........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK
Template Known Secondary structure 



SSS





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STTS
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   189190.........200.........210.........220.........230.........240.........250.........260........
 
  
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Query Conservation  ................................................................................
Template Conservation           
    
                                                 
               
Template Sequence  LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC
Template Known Secondary structure  TTSS
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   269270.........280.........290.........300.........310.........320.........330.........340........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation        
  
                    
  
                      
  
                    
Template Sequence  PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE
Template Known Secondary structure 
SS






SS


TTTTTT

S
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SS


BTTTTTT
TT


TTS

BS

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T
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   349350.........360.........370.........380.........390.........400.........410.........420........
 
   237..240.........250.........260.........270.........280 .........290....
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Query Sequence  . . . . . . . . . . . . . . . . . . AGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLRDLPP. . . . ELLDAPFVRLQGNP
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Template Sequence  SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP
Template Known Secondary structure  T



SS


GGGGSS

TT
S

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TTTTSS


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TTSTTT
TT




S

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   429430.........440.........450.........460.........470.........480.........490.........500........
 
   295..
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Query Sequence  LGE
Query Conservation 
  
Alig confidence 


Template Conservation    
Template Sequence  WDC
Template Known Secondary structure  B

Template Predicted Secondary structure 


Template SS confidence 


   509510.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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