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Job DescriptionQ9HB75
Confidence99.26%DateWed May 9 17:48:56 BST 2012
Rank93Aligned Residues296
% Identity16%Templatec2p1nE_
PDB info PDB header:signaling proteinChain: E: PDB Molecule:transport inhibitor response 1 protein; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70......
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Query Sequence  PELEAAAAAGDASEDSDAGSRALPFLGGNRLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQ. . . . . . . . . . .
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Template Conservation    
  
 
                        
             
         
  
 
                  
Template Sequence  PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP
Template Known Secondary structure  TT
S
S






T
TT



TT

GGGGGGGSGGGGS
S
TT



TT
T
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   235....240.........250.........260.........270.........280.........290.........300.........310....
 
   77..80.........90.........100.........110.........120.........130......... 140....
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Query Sequence  . . . . . . . . . . LLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLET. . LPACV
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Template Conservation   
  
          
         
  
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Template Sequence  KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV. SVSMGCPKLESVLYFCRQMTNAALITIA
Template Known Secondary structure  T

TTS

TT


S
TT
SS
SS


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TT

S


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   315....320.........330.........340.........350.........360..... ....370.........380.........390...
 
   145....150.........160.. .......170.........180.........190.. .......200........ .
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Query Sequence  LQMRGLGALLLSHNCLSE. . . . . . . . . . . . LPEALGALPALTFLTVTHNRLQTLPPALGA. LSTLQRLDLSQNLLDT. . L
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Template Sequence  RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM
Template Known Secondary structure 
TT

SSTT


TTT


T
TT



SS


TT

S

SS
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   394.....400.........410.........420.........430.........440.........450.........460.........470...
 
   210.........220.........230 .........240.........250.... .....260. ........270.........280.....
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Query Sequence  PPEIGGLGSLLELNLASNRLQ. . SLPASLAGLRSLRLLVLHSNLLAS. VPADLAR. LPLLTRLDLRDNQLRDLPPELLDA
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Template Conservation    
      
  
 
  
 
 
  
         
  
 
  
         
                           
Template Sequence  HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPV
Template Known Secondary structure 
TT

S
S
BTSGGGGGSSSSB
B
TT
TTS
GGGS
TTSB
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   474.....480.........490.........500.........510.........520.........530.........540.........550...
 
   286...290.........300.....
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Query Sequence  PFVRLQGNPLGEASPDAPSS
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Template Conservation          .        
  
Template Sequence  ERVFIYRT. VAGPRFDMPGF
Template Known Secondary structure  S
.SS
S
S


TT
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   554.....560. ........570..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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