Return to main results Retrieve Phyre Job Id

Job DescriptionQ9HB75
Confidence99.88%DateWed May 9 17:48:56 BST 2012
Rank21Aligned Residues268
% Identity25%Templatec2id5D_
PDB info PDB header:ligand binding protein,membrane proteinChain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  PELEAAAAAGDASEDSDAGSRALPFLGGNRLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQ
Query Conservation 


       
 
     

  

 
  
   
         
  
       
  
  
 

 
    
    
  

 
Alig confidence 



























.....









































....
Template Conservation 
  
 
      
 
    
  

  
 .....  
 

 
 
  
    
  
  
  
 

 
 
  
    
.... 
Template Sequence  PPRCECSAQDRAVLCHRKRFVAVPEGIP. . . . . RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF. . . . N
Template Known Secondary structure 
SSSTTTT

SS

SS

SS

.....



S




TTTTTT



S

TT




SS
S....T
Template Predicted Secondary structure 





















.....


























....
Template SS confidence 















































































   4.....10.........20.........30. ........40.........50.........60.........70... .
 
   88.90.........100.........110.........120.........130.........140.. .......150.........160.. ...
Predicted Secondary structure 










































.













.

Query SS confidence 






















































.



















.


Query Sequence  SLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPA. CVLQMRGLGALLLSHNCLSE. LPE
Query Conservation   
  
  
 
  
           
 
  

     
  
  



 
 
  

 . 
  
  
  
 
  
 
  .

 
Alig confidence 





















...........





















.



















.


Template Conservation   
  
  
 

 
 
  
    ...........   
  
  
 
                                   
Template Sequence  NLFNLRTLGLRSNRLKLIPLGV. . . . . . . . . . . FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR
Template Known Secondary structure  T
TT


TTS

S


TTT...........TTT
TT



SS



TTTTTT
TT



TT


TT
Template Predicted Secondary structure 


















...........










































Template SS confidence 















































































   78.80.........90......... 100.........110.........120.........130.........140......
 
   166...170.........180........ .190.........200.........210..
Predicted Secondary structure 
















.















................................
Query SS confidence 






















.























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  ALGALPALTFLTVTHNRLQTLPP. ALGALSTLQRLDLSQNLLDTLPPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation   
  
  
  
 

 
 
  

 .    
  
  
 

 
 
  

  ................................
Alig confidence 






















.























................................
Template Conservation         
                                                                        
Template Sequence  AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL
Template Known Secondary structure  TTTT
TT

S


SS

TT
TT

S




TT
S
S
TT



TT


TTTTTT


Template Predicted Secondary structure 















































































Template SS confidence 















































































   147..150.........160.........170.........180.........190.........200.........210.........220......
 
   213......220.........230.. .......240.........250..... ....260.........270...
Predicted Secondary structure  .................














.















.









Query SS confidence  . . . . . . . . . . . . . . . . .



















.






















.

















Query Sequence  . . . . . . . . . . . . . . . . . IGGLGSLLELNLASNRLQSL. PASLAGLRSLRLLVLHSNLLASV. PADLARLPLLTRLDLRDN
Query Conservation  .................
  
  
  
 

 
 
  
.
  
  
  
  
 

 
 
  
.
  
  
  
  



 
Alig confidence  .................



















.






















.

















Template Conservation                         
  
 
               
  
  
 
  
 
  
    
  
  
  
 

 
Template Sequence  TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN
Template Known Secondary structure  SSS

SS

TTTTTT
TT



SS



TTSSTT
TT



SS

S
TTTTTT
TT


TTS
Template Predicted Secondary structure 
































































Template SS confidence 















































































   227..230.........240.........250.........260.........270.........280.........290.........300......
 
   274.....280 .........290.....
Predicted Secondary structure 



....








Query SS confidence 






. . . .














Query Sequence  QLRDLPP. . . . ELLDAPFVRLQGNPL
Query Conservation   
  

 ....    
  
 
 



Alig confidence 






....














Template Conservation   
  
       
  
  
 
  

 
Template Sequence  QLTTLEESVFHSVGNLETLILDSNPL
Template Known Secondary structure 

S


GGG
S
GGG



SS
Template Predicted Secondary structure 

















Template SS confidence 

























   307..310.........320.........330..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions