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Job DescriptionQ9HB75
Confidence99.71%DateWed May 9 17:48:56 BST 2012
Rank54Aligned Residues180
% Identity25%Templatec3rfsA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:internalin b, repeat modules, variable lymphocyte receptor PDBTitle: design of a binding scaffold based on variable lymphocyte receptors of2 jawless vertebrates by module engineering
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   110.........120.........130.........140.........150.........160.........170.........180..... ...
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Query Sequence  LRGALTNLPAGLSGLAHLAHLDLSFNSLETLPACVLQMRGLGALLLSHNCLSELPEALGALPALTFLTVTHNRLQT. LPP
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Template Sequence  KKKSV. TDAVTQNELNSIDQIIANNSDIKSVQG. IQYLPNVRYLALGGNKLHDI. SALKELTNLTYLILTGNQLQSLPNG
Template Known Secondary structure  T
S
T.TS
TT


TTS




TT.GGG
TT


TTS




.GGGTT
TT


TTS





TT
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   27..30. ........40.........50........ .60.........70........ .80.........90.........100...
 
   189190.........200.........210.. .......
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Query Sequence  ALGALSTLQRLDLSQNLLDTLPPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IGGLGSL
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Template Sequence  VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL
Template Known Secondary structure  TTTT
TT


TTS





TTTTTT
TT



SS





TTTTTT
TT



SS





TTTTTT
TT
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   104.....110.........120.........130.........140.........150.........160.........170.........180...
 
   220.........230..... ....240.........250.... .. ...260.........270.........280.........290.....
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Query Sequence  LELNLASNRLQSLPAS. LAGLRSLRLLVLHSNLLAS. VP. . ADLARLPLLTRLDLRDNQLRDLPPELLDAPFVRLQGNPL
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Template Sequence  KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCS. . . . GSGKPV
Template Known Secondary structure 


SS

S


TTTTTT
TT



SS
B


TTTTTGGGBB
TTS
B
GGGSBBT....TT

BG
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   184.....190.........200.........210.........220.........230.........240.........250... ......
 
   296
Predicted Secondary structure 
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Query Sequence  G
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  R
Template Known Secondary structure  G
Template Predicted Secondary structure 
Template SS confidence 
   260
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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