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Job Description | Q9HB75 | Confidence | 43.56% | Date | Wed May 9 17:48:56 BST 2012 |
Rank | 136 | Aligned Residues | 67 |
% Identity | 12% | Template | c2aivA_ |
PDB info |
PDB header:transport protein | Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116; |
PDBTitle: multiple conformations in the ligand-binding site of the2 yeast nuclear pore targeting domain of nup116p
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Resolution | UNK |
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508 | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | |
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. | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query Sequence |   |
G | E | P | E | A | A | V | S | P | L | L | C | L | S | Q | S | G | P | P | S | F | L | Q | P | V | T | V | Q | L | . |
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P | L | P | S | G | I | T | G | L | S | L | D | . |
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R | S | R | L | H | L | L | Y | W | A | P | P | A | A | T | W | D | D | I | T |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
E | P | K | T | C | I | I | Y | A | N | L | P | N | R | P | K | R | G | E | G | I | N | V | R | A | R | I | T | C | F | N | C | Y | P | V | D | K | S | T | R | K | P | I | K | D | P | N | H | Q | L | V | K | R | H | I | E | R | L | K | K | N | P | N | S | K | F | E | S | Y | D | A | D | S | G | T | Y | . |
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Template Known Secondary structure |   |
| S | S | S |  |  |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
63 | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | |
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569 | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
A | Q | V | V | L | E | L | T | H | L | Y | A | R | F | Q | V | T | H | F | S | W | Y |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
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V | F | I | V | N | H | A | A | E | Q |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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139 | 140 | . | . | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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