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Job DescriptionQ9HB75
Confidence99.95%DateWed May 9 17:48:56 BST 2012
Rank5Aligned Residues263
% Identity27%Templatec1ziwA_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 3; PDBTitle: human toll-like receptor 3 extracellular domain structure
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.........70.........80.........90.......
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Query Sequence  DASEDSDAGSRALPFLGGNRLSLDLYPGGCQQLLHLCVQQPLQLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVL
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Template Conservation      
    
  

  
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Template Sequence  EVADCSHLKLTQVPDDLP. . TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ. . . . KLPMLKVLNL
Template Known Secondary structure  S

SS

SS

S
S
..TT
S

SS





GGGGGGGTT
S

SS





TT....
TT


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   33......40.........50 .........60.........70.........80.........90...... ...100......
 
   98.100.........110.........120.........130.........140 .........150.........160.. .......170.....
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Query Sequence  KGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETL. PACVLQMRGLGALLLSHNCLSE. LPEALGALPALTF
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Template Conservation 
 
 
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Template Sequence  QHNELSQLSDKT. . . . . . . . . . . FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQE
Template Known Secondary structure 
SS





TTT...........TTT
TT
S

SS





S
TTTT
TT



SS

S




SSS

TT

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   107..110........ .120.........130.........140.........150.........160.........170.....
 
   176...180.........190.......
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Query Sequence  LTVTHNRLQTLPPALGALSTLQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation       
                                                                          
Template Sequence  LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL
Template Known Secondary structure 

SS



B
GGGTT
S
TT




B
TTGGGGSS

TT


TTS



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   176...180.........190.........200.........210.........220.........230.........240.........250.....
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK
Template Known Secondary structure  TTS



TTTTGGGGGS



TTS



TTTTTT
TT



S

BS
TTTTTT
TT


TT
B

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   256...260.........270.........280.........290.........300.........310.........320.........330.....
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  QLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK
Template Known Secondary structure 



TTTTTT
TT



S

B



TTTTTT
TT


TT
BS



TTTTGGGTTS



TTS


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   336...340.........350.........360.........370.........380.........390.........400.........410.....
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                                                                                  
Template Sequence  IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP
Template Known Secondary structure 
TTTTTT
TT



SS



SGGGTT
TT



S
S

TTTTTT
TT


TTS

B
TT
SS
T
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   422.......430.........440.........450.........460.........470.........480.........490.........500.
 
   198.200.........210.. .......220.........230.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RLDLSQNLLDTLPPE. . . . . . . . . IGGLGSLLELNLASNRLQSLPAS.
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Template Conservation                             
  
  
 
  
 
  
               
  
  
 

 
 
       
Template Sequence  FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV
Template Known Secondary structure  TTT
TT



SS





TTTTTT
TT



SS

GGGGSTTSTTS


TTTT
TT



SS





TTT
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   502.......510.........520.........530.........540.........550.........560.........570.........580.
 
   236...240.........250..... ....260.........270.........280. ........290.......
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Query Sequence  LAGLRSLRLLVLHSNLLASV. PADLARLPLLTRLDLRDNQLRDLPPE. . . . . LLDAPFVRLQGNPLGE
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Template Conservation 
  
  
  
 

 
 
          
  
  
 

 
 
           
  
  
 
  

  
Template Sequence  FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC
Template Known Secondary structure  TTT
TT



SS





TTTTTT
TT


TTS


B

TT
S
TT



B
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   582.......590.........600.........610.........620.........630.........640.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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