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Job DescriptionQ9HB75
Confidence99.81%DateWed May 9 17:48:56 BST 2012
Rank35Aligned Residues198
% Identity25%Templatec3o6nA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   92.......100.........110.........120.........130.........140... ......150.........160...... ...
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Query Sequence  LRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLETLPAC. VLQMRGLGALLLSHNCLSELPEA. LGA
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Template Sequence  CIDCVFYDVHIDMQTQDVYFGFE. . . . . . DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY
Template Known Secondary structure  B

S

SS



S
S......SGGG


SS
S
T



S
TTS



TTTTTT
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   145....150.........160....... ..170.........180.........190.........200.........210........
 
   170.........180........ .190.........200.........210..
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Query Sequence  LPALTFLTVTHNRLQTLPP. ALGALSTLQRLDLSQNLLDTLPPE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ
Template Known Secondary structure 
TT



SS





TTTTTT
TT



SS





TTTTTT
TT



SS


B

TTTTSS
TT

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   225....230.........240.........250.........260.........270.........280.........290.........300....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
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Template Sequence  LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLV
Template Known Secondary structure 

SS

SB

GGG
TT
S

SS

S

SS
S

SS






SS



SS




GGGGG
TT
S
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   305....310.........320.........330.........340.........350.........360.........370.........380....
 
   213......220.........230.........240.........250.........260.........270......
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Query Sequence  . . . . . . . . . . . . . . . . IGGLGSLLELNLASNRLQSLPASLAGLRSLRLLVLHSNLLASVPADLARLPLLTRLDLRDNQLR
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Template Sequence  EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV
Template Known Secondary structure 

SS


SGGGTT
SS



SS



SSS

TT



SS




GGGTT
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SS


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   385....390.........400.........410.........420.........430.........440.........450.........460....
 
   277..280 .........290.....
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Query Sequence  DLPP. ELLDAPFVRLQGNPL
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Template Sequence  TLKLSTHHTLKNLTLSHNDW
Template Known Secondary structure 




TT


S

SS
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   465....470.........480....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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