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Job DescriptionQ9HB75
Confidence98.01%DateWed May 9 17:48:56 BST 2012
Rank107Aligned Residues203
% Identity22%Templatec1fqvK_
PDB info PDB header:ligaseChain: K: PDB Molecule:skp2; PDBTitle: insights into scf ubiquitin ligases from the structure of2 the skp1-skp2 complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   60.........70.........80.........90.........100.........110.........120.........130.........
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Query Sequence  QLLQVEFLRLSTHEDPQLLEATLAQLPQSLSCLRSLVLKGGQRRDTLGACLRGALTNLPAGLSGLAHLAHLDLSFNSLET
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Template Sequence  SPFRVQHMDLSNSVIE. . . VSTLHGILSQCSKLQNLSLEGLRLSDPIVNT. . . . . . . . . . . LAKNSNLVRLNLSGCSGFS
Template Known Secondary structure  S





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   191........200...... ...210.........220.........230....... ..240.........250......
 
   140.........150.........160.. .......170.........180..... ....190.........200......
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Query Sequence  . . . LPACVLQMRGLGALLLSHNCLSE. . . . LPEALGALPALTFLTVTHNRLQT. . . . LPPALGALSTLQRLDLSQNLL. .
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Template Sequence  EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK
Template Known Secondary structure 
TT





TT

S
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TT
TTT


TT
S
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   257..260.........270.........280.........290.........300.........310.........320.........330......
 
   207..210.........220...... ...230. ........240.........250... ......260.........270.......
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Query Sequence  DTLPPEIGGLGSLLELNLAS. NRLQS. LPASLAGLRSLRLLVLHSNLLA. . SVPADLARLPLLTRLDLRDNQLRD
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Template Sequence  NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI. VPDGTLQLLKEALPHLQINCSHFTTIAR
Template Known Secondary structure  GGGTT
SS


TT
TTS
GGGGGGGGS
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TTS.S

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   337..340.........350.........360.........370.........380.. .......390.........400.........410
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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