Email l.a.kelley@imperial.ac.uk Description A1A5C7 Date Wed May 9 18:02:57 BST 2012 Unique Job ID 7e23fddf87cb6512

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3o7pA_ 100.0 8 PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) 2 d1pw4a_ 100.0 16 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 3 c2xutC_ 100.0 11 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 4 c2gfpA_ 99.9 13 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 5 d1pv7a_ 99.9 9 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 6 d1vhib_ 32.5 50 Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain 7 d1b3ta_ 28.7 50 Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain 8 c2jm2A_ 27.7 47 PDB header:hormone/growth factor Chain: A: PDB Molecule:insulin-like growth factor-binding protein 6; PDBTitle: structure of the n-terminal subdomain of insulin-like2 growth factor (igf) binding protein-6 and its interactions3 with igfs 9 d1z8ga2 26.4 28 Fold:SRCR-like Superfamily:SRCR-like Family:Hepsin, N-terminal domain 10 c2oyaA_ 22.2 28 PDB header:ligand binding protein Chain: A: PDB Molecule:macrophage receptor marco; PDBTitle: crystal structure analysis of the dimeric form of the srcr domain of2 mouse marco 11 c3rnvA_ 20.4 13 PDB header:hydrolase Chain: A: PDB Molecule:helper component proteinase; PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase 12 c1r7gA_ 18.9 50 PDB header:membrane protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 100mm dpc) 13 c1z8gA_ 18.0 28 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:serine protease hepsin; PDBTitle: crystal structure of the extracellular region of the transmembrane2 serine protease hepsin with covalently bound preferred substrate. 14 d1riea_ 16.5 33 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 15 d1tkla_ 15.8 18 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 16 c1s6xA_ 15.7 67 PDB header:toxin Chain: A: PDB Molecule:kvap channel; PDBTitle: solution structure of vstx 17 c2nvgA_ 15.6 33 PDB header:oxidoreductase Chain: A: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit; PDBTitle: soluble domain of rieske iron sulfur protein. 18 c2g9pA_ 15.5 21 PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom 19 d2nefa_ 14.9 27 Fold:Regulatory factor Nef Superfamily:Regulatory factor Nef Family:Regulatory factor Nef 20 c2aexA_ 14.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:coproporphyrinogen iii oxidase, mitochondrial; PDBTitle: the 1.58a crystal structure of human coproporphyrinogen oxidase2 reveals the structural basis of hereditary coproporphyria 21 c3rbbA_ not modelled 14.2 30 PDB header:viral protein, protein binding Chain: A: PDB Molecule:protein nef; PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain 22 d1by2a_ not modelled 13.8 39 Fold:SRCR-like Superfamily:SRCR-like Family:Scavenger receptor cysteine-rich (SRCR) domain 23 d1vjua_ not modelled 13.2 36 Fold:Coproporphyrinogen III oxidase Superfamily:Coproporphyrinogen III oxidase Family:Coproporphyrinogen III oxidase 24 d1efnb_ not modelled 12.7 26 Fold:Regulatory factor Nef Superfamily:Regulatory factor Nef Family:Regulatory factor Nef 25 c2ottY_ not modelled 12.5 30 PDB header:immune system Chain: Y: PDB Molecule:t-cell surface glycoprotein cd5; PDBTitle: crystal structure of cd5_diii 26 d2fyuk1 not modelled 12.5 17 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 27 c3b9yA_ not modelled 12.2 11 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 28 c3gceA_ not modelled 10.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin component of carbazole 1,9a- PDBTitle: ferredoxin of carbazole 1,9a-dioxygenase from nocardioides2 aromaticivorans ic177 29 d1dd1a_ not modelled 9.9 38 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 30 d1mjsa_ not modelled 9.9 57 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 31 d3cx5e1 not modelled 9.9 33 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 32 d1khua_ not modelled 9.7 43 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 33 c2yvxD_ not modelled 9.5 16 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 34 d1g2ha_ not modelled 9.4 35 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 35 c3ik5A_ not modelled 9.3 29 PDB header:viral protein/signaling protein Chain: A: PDB Molecule:protein nef; PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide (a63-r80) 36 c2e76D_ not modelled 9.2 25 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 37 d1fqta_ not modelled 9.0 21 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 38 d1nyka_ not modelled 9.0 36 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 39 d1ygsa_ not modelled 8.9 38 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 40 c2krhA_ not modelled 8.9 27 PDB header:actin-binding protein Chain: A: PDB Molecule:actin-binding rho-activating protein; PDBTitle: structure of the c-terminal actin binding domain of abra 41 d1k1xa2 not modelled 8.7 36 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:4-alpha-glucanotransferase, C-terminal domain 42 d1vm9a_ not modelled 8.6 21 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 43 c3dinF_ not modelled 8.4 15 PDB header:membrane protein, protein transport Chain: F: PDB Molecule:preprotein translocase subunit secy; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 44 d1l0nk_ not modelled 8.4 15 Fold:Single transmembrane helix Superfamily:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Family:Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 45 c2i7fB_ not modelled 8.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin component of dioxygenase; PDBTitle: sphingomonas yanoikuyae b1 ferredoxin 46 c2l7kA_ not modelled 7.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of protein cd1104.2 from clostridium difficile,2 northeast structural genomics consortium target cfr130 47 d1rfsa_ not modelled 7.8 15 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 48 c1khxA_ not modelled 7.8 50 PDB header:transcription Chain: A: PDB Molecule:smad2; PDBTitle: crystal structure of a phosphorylated smad2 49 d1khxa_ not modelled 7.8 50 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:SMAD domain 50 c2de7E_ not modelled 7.5 14 PDB header:oxidoreductase Chain: E: PDB Molecule:ferredoxin component of carbazole; PDBTitle: the substrate-bound complex between oxygenase and2 ferredoxin in carbazole 1,9a-dioxygenase 51 d1nvpd1 not modelled 7.5 11 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 52 c3ljkA_ not modelled 7.4 44 PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis. 53 c2qpzA_ not modelled 7.4 14 PDB header:metal binding protein Chain: A: PDB Molecule:naphthalene 1,2-dioxygenase system ferredoxin PDBTitle: naphthalene 1,2-dioxygenase rieske ferredoxin 54 d1nh2d1 not modelled 7.4 11 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 55 d2jo6a1 not modelled 7.3 7 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 56 c2jopA_ not modelled 7.2 40 PDB header:immune system Chain: A: PDB Molecule:t-cell surface glycoprotein cd5; PDBTitle: solution structure of the n-terminal extracellular domain2 of the lymphocyte receptor cd5 (cd5 domain 1) 57 d1vi7a2 not modelled 7.2 18 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:YigZ C-terminal domain-like 58 d2raqa1 not modelled 7.1 28 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 59 c2lafA_ not modelled 7.1 7 PDB header:membrane protein Chain: A: PDB Molecule:lipoprotein 34; PDBTitle: nmr solution structure of the n-terminal domain of the e. coli2 lipoprotein bamc 60 c1qdnA_ not modelled 7.1 13 PDB header:fusion protein Chain: A: PDB Molecule:protein (n-ethylmaleimide sensitive fusion PDBTitle: amino terminal domain of the n-ethylmaleimide sensitive2 fusion protein (nsf) 61 d3bpda1 not modelled 7.0 28 Fold:Ferredoxin-like Superfamily:MTH889-like Family:MTH889-like 62 d2de6a1 not modelled 6.9 36 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 63 c3cvfA_ not modelled 6.9 25 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 64 c2vjjA_ not modelled 6.9 43 PDB header:viral protein Chain: A: PDB Molecule:tailspike protein; PDBTitle: tailspike protein of e.coli bacteriophage hk620 in complex2 with hexasaccharide 65 c3fmtF_ not modelled 6.9 19 PDB header:replication inhibitor/dna Chain: F: PDB Molecule:protein seqa; PDBTitle: crystal structure of seqa bound to dna 66 c2x3dC_ not modelled 6.8 22 PDB header:unknown function Chain: C: PDB Molecule:sso6206; PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2 67 c3d89A_ not modelled 6.7 14 PDB header:electron transport Chain: A: PDB Molecule:rieske domain-containing protein; PDBTitle: crystal structure of a soluble rieske ferredoxin from mus musculus 68 c1nvpD_ not modelled 6.6 11 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex 69 d1xgsa1 not modelled 6.6 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Methionine aminopeptidase, insert domain 70 c3j01A_ not modelled 6.3 12 PDB header:ribosome/ribosomal protein Chain: A: PDB Molecule:preprotein translocase secy subunit; PDBTitle: structure of the ribosome-secye complex in the membrane environment 71 d2nsfa2 not modelled 6.3 57 Fold:SCP-like Superfamily:SCP-like Family:Micothiol-dependent maleylpyruvate isomerase C-terminal domain-like 72 c2l2oA_ not modelled 6.3 33 PDB header:unknown function Chain: A: PDB Molecule:upf0727 protein c6orf115; PDBTitle: solution structure of human hspc280 protein 73 c3nuhB_ not modelled 6.2 22 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function 74 d3c0da1 not modelled 6.1 7 Fold:ISP domain Superfamily:ISP domain Family:NirD-like 75 c2eqfA_ not modelled 6.0 23 PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3; PDBTitle: solution structure of the 7th a20-type zinc finger domain2 from human tumor necrosis factor, alpha-induced protein3 76 c1nh2D_ not modelled 6.0 11 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia small chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 77 d2z15a1 not modelled 5.9 33 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 78 d2e74d1 not modelled 5.9 23 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 79 d2bmoa1 not modelled 5.9 33 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 80 c3chxG_ not modelled 5.8 20 PDB header:membrane protein Chain: G: PDB Molecule:pmoc; PDBTitle: crystal structure of methylosinus trichosporium ob3b2 particulate methane monooxygenase (pmmo) 81 d1z01a1 not modelled 5.8 14 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 82 c2kc7A_ not modelled 5.8 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bfr218_protein; PDBTitle: solution nmr structure of bacteroides fragilis protein2 bf1650. northeast structural genomics consortium target3 bfr218 83 c1yewC_ not modelled 5.7 17 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 84 d1qk7a_ not modelled 5.7 44 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 85 d1g8kb_ not modelled 5.5 14 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 86 d1wgla_ not modelled 5.5 14 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 87 d1j97a_ not modelled 5.4 19 Fold:HAD-like Superfamily:HAD-like Family:Phosphoserine phosphatase 88 d2b1xa1 not modelled 5.4 25 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 89 d3e9va1 not modelled 5.4 33 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 90 c2w7zB_ not modelled 5.4 39 PDB header:inhibitor Chain: B: PDB Molecule:pentapeptide repeat family protein; PDBTitle: structure of the pentapeptide repeat protein efsqnr, a dna2 gyrase inhibitor. free amines modified by cyclic3 pentylation with glutaraldehyde. 91 c3bu8B_ not modelled 5.3 8 PDB header:dna binding protein Chain: B: PDB Molecule:telomeric repeat-binding factor 2; PDBTitle: crystal structure of trf2 trfh domain and tin2 peptide2 complex 92 d1j2ga2 not modelled 5.2 44 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 93 c2x7aB_ not modelled 5.2 16 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 94 d1q90c_ not modelled 5.2 15 Fold:ISP domain Superfamily:ISP domain Family:Rieske iron-sulfur protein (ISP) 95 d2yzca2 not modelled 5.1 44 Fold:T-fold Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like Family:Urate oxidase (uricase) 96 d1mb6a_ not modelled 5.1 43 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 97 c2avpA_ not modelled 5.0 4 PDB header:de novo protein Chain: A: PDB Molecule:synthetic consensus tpr protein; PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix 98 c2k4fA_ not modelled 5.0 25 PDB header:immune system, signaling protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 epsilon chain; PDBTitle: mouse cd3epsilon cytoplasmic tail 99 d1a7ge_ not modelled 5.0 21 Fold:Ferredoxin-like Superfamily:Viral DNA-binding domain Family:Viral DNA-binding domain