Job Description A1A5C7 Confidence 99.98% Date Wed May 9 18:02:57 BST 2012 Rank 1 Aligned Residues 376 % Identity 8% Template c3o7pA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Resolution 3.20 Å

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		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence		Q	N	V	V	S	K	W	D	L	V	C	D	N	A	W	K	V	H	I	A	K	F	S	L	L	V	G	L	I	F	G	Y	L	I	T	G	C	I	A	D	W	V	G	R	R	P	V	L	L	F	S	I	I	F	I	L	I	F	G	L	T	V	A	L	S	.	.	.	V	N	V	T	M	F	S	T	L	R	F	F
Query Conservation																																																																			.	.	.
Alig confidence											.	.	.																																																						.	.	.
Template Conservation											.	.	.
Template Sequence		D	I	L	L	P	Q	F	Q	Q	.	.	.	A	F	F	Q	A	G	L	I	Q	S	A	F	Y	F	G	Y	F	I	I	P	I	P	A	G	I	L	M	K	K	L	S	Y	K	A	G	I	I	T	G	L	F	L	Y	A	L	G	A	A	L	F	W	P	A	A	E	I	M	N	Y	T	L	F	L	V	G	L	F	I
Template Known Secondary structure										T	.	.	.	T			T	T													T	T											S																			T							T	T
Template Predicted Secondary structure											.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.					340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.
Query SS confidence																																																				.	.	.	.
Query Sequence		E	G	F	C	L	A	G	I	I	L	T	L	Y	A	L	R	I	E	L	C	P	P	G	K	R	F	M	I	T	M	V	A	S	F	V	A	M	A	G	Q	F	L	M	P	G	L	A	A	L	C	.	.	.	.	R	D	W	Q	V	L	Q	A	L	I	I	C	P	F	L	L	M	L	L	Y	W	S	I	F	P	E
Query Conservation																																																				.	.	.	.
Alig confidence																																																				.	.	.	.
Template Conservation
Template Sequence		I	A	A	G	L	G	C	L	E	T	A	A	N	P	F	V	T	V	L	G	P	E	S	S	G	H	F	R	L	N	L	A	Q	T	F	A	S	F	G	A	I	I	A	V	V	F	G	Q	S	L	I	L	S	N	V	P	H	Q	S	Q	D	V	L	D	K	M	S	P	E	Q	L	S	A	Y	K	H	S	L	V	L
Template Known Secondary structure																				S	S		G	G	G																										T	T	S	S	S	S											S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	R	W	L	M	A	T	Q	Q	F	E	S	A	K	R	L	I	L	H	F	T	Q	K	N	R	M	N	P	E	G	D	I	K	G	V	I	P	E	L	E	K	E	L	S	R	R	P	K	K	V	C	I	V	K	V	V	G	T	R	N	L	W	K	N	I	V	V	L	C	V	N	S	L	T	G	Y	G	I	H
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		S	V	Q	T	P	Y	M	I	I	V	A	I	V	L	L	V	A	L	L	I	M	L	T	K	F	P	A	L	.	.	.	.	.	.	.	.	Q	S	D	N	H	S	D	A	K	Q	G	S	F	S	A	S	L	S	R	L	A	R	I	R	H	W	R	W	A	V	L	A	Q	F	C	Y	V	G	A	Q	T	A	C	W
Template Known Secondary structure				T	T																			S						.	.	.	.	.	.	.	.	T	T	T					S	S	T	T	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.									.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	C	F	A	R	S	M	M	G	H	E	V	K	V	P	L	L	E	N	F	Y	A	D	Y	Y	T	T	A	S	I	A	L	V	S	C	L	A	M	C	V	V	V	R	F	L	G	R	R	G	G	L	L	L	F	M	I	L	T	A	L	A	S	L	L	Q	L	G	L	L	N	L	I	G	K	Y	S	Q	H	P	D
Query Conservation
Alig confidence														.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Y	L	I	R	Y	A	V	E	E	I	P	.	G	M	T	A	G	F	A	A	N	Y	L	T	G	T	M	V	C	F	F	I	G	R	F	T	G	T	W	L	I	S	R	F	A	P	H	K	V	L	A	A	Y	A	L	I	A	M	A	L	C	L	I	S	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												S	T	.	T																															S																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.			590	.	.	.	.	.	.		.	.	.	600	.	.
Predicted Secondary structure																																																																		.	.								.
Query SS confidence																																																																		.	.								.
Query Sequence		S	G	M	S	D	S	V	K	D	K	F	S	I	A	F	S	I	V	G	M	F	A	S	H	A	V	G	S	L	S	V	F	F	C	A	E	I	T	P	T	V	I	R	C	G	G	L	G	L	V	L	A	S	A	G	F	G	M	L	T	A	P	I	I	.	.	E	L	H	N	Q	K	G	.	Y	F	L	H	H	I
Query Conservation																																																																		.	.								.
Alig confidence		.	.	.	.	.	.																																			.	.																							.	.								.
Template Conservation		.	.	.	.	.	.																																			.	.
Template Sequence		.	.	.	.	.	.	A	G	G	H	V	G	L	I	A	L	T	L	C	S	A	F	M	S	I	Q	Y	P	T	I	F	S	L	G	I	K	N	L	G	Q	.	.	D	T	K	Y	G	S	S	F	I	V	M	T	I	I	G	G	G	I	V	T	P	V	M	G	F	V	S	D	A	A	G	N	I	P	T	A	E	L
Template Known Secondary structure		.	.	.	.	.	.	S																	T	T											S	S		G	G	.	.	G											G	G	G																	T	S	S	G	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.																																			.	.
Template SS confidence
								345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	A	C	C	T	L	I	C	I	I	C	I	L	L	L	P	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	P	A	L	C	F	A	V	I	F	I	F	A	R	F	R	S	Q	T
Template Known Secondary structure															T	S
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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