Job Description A1A5C7 Confidence 9.34% Date Wed May 9 18:02:57 BST 2012 Rank 35 Aligned Residues 31 % Identity 29% Template c3ik5A_ PDB info PDB header:viral protein/signaling protein Chain: A: PDB Molecule:protein nef; PDBTitle: sivmac239 nef in complex with tcr zeta itam 1 polypeptide (a63-r80) Resolution 2.05 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	L	H	P	G	G	G	P	H	P	S	C	C	S	A	A	A	A	P	S	L	L	L	L	D	Y	D	G	S	V	L	P	F	L	G	G	L	G	G	G	Y
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.							.
Template Conservation														.	.	.	.	.	.	.	.	.	.							.
Template Sequence		R	P	K	V	P	L	R	T	M	S	Y	K	.	.	.	.	.	.	.	.	.	.	L	A	I	D	M	S	.	H	F	I	K	E	K	G	G	L	E	G	I	Y
Template Known Secondary structure								B						.	.	.	.	.	.	.	.	.	.							.							T		S	T	T		B
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.							.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.											.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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