Job Description A1A5C7 Confidence 12.25% Date Wed May 9 18:02:57 BST 2012 Rank 27 Aligned Residues 376 % Identity 11% Template c3b9yA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein Resolution 1.85 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		A	D	W	V	G	R	R	P	V	L	L	F	S	I	I	F	I	L	I	.	F	G	L	T	V	A	L	S	V	N	V	T	M	F	S	T	L	R	F	F	E	G	F	C	L	A	G	I	I	L	T	L	Y	A	L	R	I	E	L	C	P	P	G	K	R	F	M	I	T	M	V	A	S	F	V	A	M	A	G	Q
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		A	R	L	V	A	Q	Y	N	Y	S	I	N	I	L	A	M	L	L	V	G	F	G	F	L	M	V	F	V	R	R	Y	G	F	S	A	T	T	G	T	Y	L	V	V	A	T	G	L	P	L	Y	I	L	L	R	A	N	G	I	F	G	H	A	L	T	P	H	S	V	D	A	V	I	Y	A	E	F	A	V	A	T
Template Known Secondary structure																										G	G	G	S	T	T																										T	T	T	T	S	S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	M	P	G	L	A	A	L	C	R	D	W	Q	V	L	Q	A	L	I	I	C	P	F	L	L	M	L	L	Y	W	S	I	F	P	E	S	L	R	W	L	M	A	T	Q	Q	F	E	S	A	K	R	L	I	L	H	F	T	Q	K	N	R	M	N	P	E	G	D	I	K	G	V	I	P	E	L	E	K	E	L
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	I	A	M	G	A	V	L	G	R	L	R	V	F	Q	Y	A	L	L	A	L	F	I	V	P	V	Y	L	L	N	E	W	L	V	L	D	N	A	S	G	L	T	E	G	F	Q	D	S	A	.	.	.	.	.	.	.	.	.	.	.	G	S	I	A	I	H	A	F	G	A	Y	F	G	L	G	V	S	I	A
Template Known Secondary structure										T	T	S	S																								T	T		T	T	S	S		T	T				T	T	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.												.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	R	P	K	K	V	C	I	V	K	V	V	G	T	R	N	L	W	K	N	I	V	V	L	C	V	N	S	L	T	G	Y	G	I	H	H	C	F	A	R	S	M	M	G	H	E	V	K	V	P	L	L	E	N	F	Y	A	D	Y	Y	T	T	A	S	I	A	L	V	S	C	L	A	M	C	V	V	V	R	F
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.
Template Sequence		L	T	T	A	A	Q	R	A	Q	P	I	E	S	D	A	T	S	D	R	F	S	M	L	G	S	M	V	L	W	L	F	W	P	S	F	A	.	.	.	.	.	.	.	.	T	A	I	V	P	F	E	Q	M	P	Q	T	I	V	N	T	L	L	A	L	C	G	A	T	L	A	T	Y	F	L	S	A	L	F	H	K
Template Known Secondary structure									T	S																												.	.	.	.	.	.	.	.		T	T	S		G	G	G																											T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.									220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	R	R	G	G	L	L	L	F	M	I	L	T	A	L	A	S	L	L	Q	L	G	L	L	N	L	I	G	K	Y	S	Q	H	P	D	S	G	M	S	D	S	V	K	D	K	F	S	I	A	F	S	I	V	G	M	F	A	S	H	A	V	G	S	L	S	V	F	F	C	A	E	I	T	P	T	V	I	R	C
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	K	A	S	I	V	D	M	A	N	A	A	L	A	G	G	V	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	V	C	N	I	V	G	P	V	G	A	F	V	I	G	L	L	G	G	A	I	S	V	V	G	F	V	F	I	Q	P	M	L	E	S	K	A	K	T	I	D	T	C
Template Known Secondary structure		T											T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	T	S																						T									S					T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.																		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.		.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		G	G	L	G	L	V	L	A	S	A	G	F	G	M	L	T	A	P	I	I	E	L	H	N	Q	K	G	Y	F	L	H	H	I	I	F	A	C	C	T	L	I	C	I	I	C	I	L	L	.	L	P	E	S	R	D	Q	N	L	P	E	N	I	S	N	G	E	H	Y	T	R	Q	P	L	L	P	H	K	K	G	E
Query Conservation																																																		.
Alig confidence																																																		.													.	.	.	.
Template Conservation																																																															.	.	.	.
Template Sequence		G	V	H	N	L	H	G	L	P	G	L	L	G	G	F	S	A	I	L	I	V	P	G	I	A	V	A	Q	L	T	G	I	G	I	T	L	A	L	A	L	I	G	G	V	I	A	G	A	L	I	K	L	T	G	T	T	K	Q	A	Y	E	.	.	.	.	D	S	H	E	F	I	H	L	A	G	P	E	D	E	H
Template Known Secondary structure							T	T														S	T	T																													T	T				S	S	T	T		.	.	.	.	G	G	G	T	S	S	S				G	G	G	T	T
Template Predicted Secondary structure																																																															.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	L	L	L	T	N	A	E	L	K	D	Y	S	G	L	H	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	E	R	L	V	L	E	A	K	T	E	I	Q	G	L	K	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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