Job Description A1A5C7 Confidence 99.95% Date Wed May 9 18:02:57 BST 2012 Rank 3 Aligned Residues 381 % Identity 11% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																																.																								.
Query SS confidence																																.																								.
Query Sequence		N	A	W	K	V	H	I	A	K	F	S	L	L	V	G	L	I	F	G	Y	L	I	T	G	C	I	A	D	W	V	.	G	R	R	P	V	L	L	F	S	I	I	F	I	L	I	F	G	L	T	V	A	L	S	.	V	N	V	T	M	F	S	T	L	R	F	F	E	G	F	C	L	A	G	I	I	L	T	L	Y
Query Conservation																																.																								.
Alig confidence																																.																								.
Template Conservation
Template Sequence		R	G	A	V	A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S	L	I	Y	C	V	G	H	A	F	L	A	I	F	E	H	S	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S
Template Known Secondary structure		T	T	T	T															T									T	T	S	S		S																					T	S	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.											340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	R	I	E	L	C	P	P	G	K	R	F	M	I	T	M	V	A	S	F	V	A	M	A	G	Q	F	L	M	P	G	L	A	A	L	C	.	.	.	.	.	.	.	.	.	.	R	D	W	Q	V	L	Q	A	L	I	I	C	P	F	L	L	M	L	L	Y	W	S	I	F	P	E	S	L	R	W	L	M	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	M	G	D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L	S	M	P	L	L	L	K	N	F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G
Template Known Secondary structure							T		S	T	T	T	T	T																							T	S	T					T	S																						S	S	S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.										.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	Q	F	E	S	A	K	R	L	I	L	H	F	T	Q	K	N	R	M	N	P	E	G	D	I	K	G	V	I	P	E	L	E	K	E	L	S	R	R	P	K	K	V	C	I	V	K	V	V	G	T	R	.	.	.	.	.	.	.	.	.	N	L	W	K	N	I	V	V	L	C	V	N	S	L	T	G	Y	G
Query Conservation																																																							.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	G	L	V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A	M	V	L	V	M	G	F	V	G	A	G	A	S	L	Q	L	E	R	A	R	K	S	H	P	D	A	A	V	D	G	V	R	S	V	L	R	I	L	V	L	F	A	L	V	T	P	F
Template Known Secondary structure																		T	G	G	G	T	T	T	T		S	S																T	G	G	G	T					S			S			S	S	S	S	T	T	T	T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	H	C	F	A	R	S	M	M	G	H	E	V	K	V	P	L	L	E	N	F	Y	A	D	Y	Y	T	T	A	S	I	A	L	V	S	C	L	A	M	C	V	V	V	R	F	L	G	R	R	G	G	L	L	L	F	M	I	L	T	A	L	A	S	L	L	Q	L	G	L	L	N	L	I	G	K	Y	S	Q	H
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.
Template Sequence		W	S	L	F	D	Q	K	A	S	T	W	I	L	Q	A	N	D	M	V	K	P	Q	W	F	E	P	A	M	M	Q	A	L	N	P	L	L	V	M	L	L	I	P	F	N	N	F	V	T	A	L	R	K	M	G	A	G	I	A	I	T	G	L	S	W	I	V	V	G	T	I	.	.	.	.	.	.	.	.	.	Q
Template Known Secondary structure			T	T	T	S	S	T	T	T									S				S	S	S							T	T	S	G	G	G					G	G	G	T	T	T									T											T	T	T	T	T	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.										.
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.														590
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	S	G	M	S	D	S	V	K	D	K	F	S	I	A	F	S	I	V	G	M	F	A	S	H	A	V	G	S	L	S	V	F	F	C	A	E	I	T	P	T	V	I	R	C	G	G	L	G	L	V	L	A	S	A	G	F	G	M	L	T	A	P	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	M	M	D	G	G	S	A	L	S	I	F	W	Q	I	L	P	Y	A	L	L	T	F	G	E	V	L	V	S	A	T	G	L	E	F	A	Y	S	Q	A	P	K	A	M	K	G	T	I	M	S	F	W	T	L	S	V	T	V	G	N	L	W	V	L	L	A	N	V	S	V	K	S	P	T	V	T	E	Q	I	V
Template Known Secondary structure		T	T	T	T	T	T					S																						T	T	T							T	T			T	T	T					G	G	G															T	T	S
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	N	Q	K	G	Y	F	L	H	H	I	I	F	A	C	C	T	L	I	C	I	I	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	G	M	S	V	T	A	F	Q	M	F	F	F	A	G	F	A	I	L	A	A	I	V
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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