Job Description A1A5C7 Confidence 99.94% Date Wed May 9 18:02:57 BST 2012 Rank 4 Aligned Residues 351 % Identity 13% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	V	V	S	K	W	D	L	V	C	D	N	A	W	K	V	H	I	A	K	F	S	L	L	V	G	L	I	F	G	Y	L	I	T	G	C	I	A	D	W	V	G	R	R	P	V	L	L	F	S	I	I	F	I	L	I	F	G	L	T	V	A	L	S	V	N	V	T	M	F	S	T	L	R	F	F	E	G	F
Query Conservation
Alig confidence											.	.	.
Template Conservation											.	.	.
Template Sequence		A	D	M	A	R	D	L	N	V	.	.	.	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L	V	A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M
Template Known Secondary structure						T	T	S	S	S	.	.	.	T	T																			T	T						T	T	S
Template Predicted Secondary structure											.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	A	G	I	I	L	T	L	Y	A	L	R	I	E	L	C	P	P	G	K	R	F	M	I	T	M	V	A	S	F	V	A	M	A	G	Q	F	L	M	P	G	L	A	A	L	C	R	D	W	Q	V	L	Q	A	L	I	I	C	P	F	L	L	M	L	L	Y	W	S	I	F	P	E	S	L	R	W	L	M	A
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	C	Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	.	.	.	.	.
Template Known Secondary structure																				T	S	S			S																							S	S																										S	S	.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	Q	F	E	S	A	K	R	L	I	L	H	F	T	Q	K	N	R	M	N	P	E	G	D	I	K	G	V	I	P	E	L	E	K	E	L	S	R	R	P	K	K	V	C	I	V	K	V	V	G	T	R	N	L	W	K	N	I	V	V	L	C	V	N	S	L	T	G	Y	G	I	H	H	C	F	A	R	S	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	T	T	T						T	T	T		S	T																														S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		453	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	H	E	V	K	V	P	L	L	E	N	F	Y	A	D	Y	Y	T	T	A	S	I	A	L	V	S	C	L	A	M	C	V	V	V	R	F	L	G	R	R	G	G	L	L	L	F	M	I	L	T	A	L	A	S	L	L	Q	L	G	L	L	N	L	I	G	K	Y	S	Q	H	P	D	S	G	M	S	D	S	V
Query Conservation
Alig confidence								.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	V	L	G	L	.	.	S	S	M	T	V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	V	M
Template Known Secondary structure								.	.											T														T	T	T	T																T	S	S	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.																.	.	.	.
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		K	D	K	F	S	I	A	F	S	I	V	G	M	F	A	S	H	A	V	G	S	L	S	V	F	F	C	A	E	I	T	P	T	V	I	R	C	G	G	L	G	L	V	L	A	S	A	G	F	G	M	L	T	A	P	I	I	.	E	L	H	N	Q	K	G	Y	F	L	H	H	I	I	F	A	C	C	T	L	I	C
Query Conservation																																																											.
Alig confidence																																		.																									.
Template Conservation																																		.
Template Sequence		N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A	M	E	P	F	P	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I
Template Known Secondary structure																				T	S	S	T	T						T				.																						S	T	T		T
Template Predicted Secondary structure																																		.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		612	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	C	I	L	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	C	W	L	P	L
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions