Phyre 2 alignment of A1A5C7 with c3rbbA_

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Job Description | A1A5C7
Confidence | 14.22% | Date | Wed May 9 18:02:57 BST 2012
Rank | 21 | Aligned Residues | 33
% Identity | 30% | Template | c3rbbA_
PDB info | PDB header:viral protein, protein binding | Chain: A: PDB Molecule:protein nef; | PDBTitle: hiv-1 nef protein in complex with engineered hck sh3 domain
Resolution | 2.35 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 52 | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | L | P | P | L | H | P | G | G | G | P | H | P | S | C | C | S | A | A | A | A | P | S | L | L | L | L | D | Y | D | G | S | V | L | P | F | L | G | G | L | G | G | G | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | V | R | P | Q | V | P | L | R | P | M | T | Y | K | . | . | . | . | . | . | . | . | . | . | A | A | L | D | I | S | . | H | F | L | K | E | K | G | G | L | E | G | L | I
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | B |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |  |  |  |  |  | S | S | T | T |  | B
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | 90 | . | . |  | . | . | . | . | . | . | . | 100 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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