19/05/2012 14:30:24 : INFO  : Run start: Sat May 19 14:30:24 BST 2012
19/05/2012 14:30:24 : INFO  : Initialised job
19/05/2012 14:30:24 : INFO  : Initialised job:
Sequence
>batch____
MAIDRRREAAGGGPGRQPAPAEENGSLPPGDAAASAPLGGRAGPGGGAEIQPLPPLHPGG
GPHPSCCSAAAAPSLLLLDYDGSVLPFLGGLGGGYQKTLVLLTWIPALFIGFSQFSDSFL
LDQPNFWCRGAGKGTELAGVTTTGRGGDMGNWTSLPTTPFATAPWEAAGNRSNSSGADGG
DTPPLPSPPDKGDNASNCDCRAWDYGIRAGLVQNVVSKWDLVCDNAWKVHIAKFSLLVGL
IFGYLITGCIADWVGRRPVLLFSIIFILIFGLTVALSVNVTMFSTLRFFEGFCLAGIILT
LYALRIELCPPGKRFMITMVASFVAMAGQFLMPGLAALCRDWQVLQALIICPFLLMLLYW
SIFPESLRWLMATQQFESAKRLILHFTQKNRMNPEGDIKGVIPELEKELSRRPKKVCIVK
VVGTRNLWKNIVVLCVNSLTGYGIHHCFARSMMGHEVKVPLLENFYADYYTTASIALVSC
LAMCVVVRFLGRRGGLLLFMILTALASLLQLGLLNLIGKYSQHPDSGMSDSVKDKFSIAF
SIVGMFASHAVGSLSVFFCAEITPTVIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLH
HIIFACCTLICIICILLLPESRDQNLPENISNGEHYTRQPLLPHKKGEQPLLLTNAELKD
YSGLHDAAAAGDTLPEGATANGMKAM

19/05/2012 14:30:24 : INFO  : Checked sequence
19/05/2012 14:30:25 : INFO  : Finding homologues with PSI-BLAST
19/05/2012 14:30:25 : INFO  : PSI-BLAST 3 iterations
19/05/2012 14:34:11 : INFO  : PSI-BLAST 5 iterations
19/05/2012 14:40:34 : INFO  : Finished PSI-BLAST
19/05/2012 14:40:34 : INFO  : Running Buildali to generate a3m file
19/05/2012 15:58:37 : INFO  : Converting to HMM
19/05/2012 15:59:08 : INFO  : Calibrating HMM
19/05/2012 15:59:27 : INFO  : Searching HMM database
19/05/2012 16:15:54 : INFO  : Finished buildali
19/05/2012 16:15:54 : INFO  : Predicting secondary structure
19/05/2012 16:15:55 : INFO  : Predicted secondary structure (PSI-Pred)
19/05/2012 16:15:55 : INFO  : Predicting Disordered regions
19/05/2012 16:15:55 : INFO  : Predicted Disorder (Disopred)
19/05/2012 16:15:55 : INFO  : Running memsat_svm check
19/05/2012 16:17:50 : INFO  : Running memsat_svm full
19/05/2012 16:19:08 : INFO  : Predicted Transmembrane (memsat_svm) ID '7e23fddf87cb6512'
19/05/2012 16:19:08 : INFO  : Initialising fold library search
19/05/2012 16:19:08 : INFO  : Initialised search input
19/05/2012 16:19:08 : INFO  : Building Ensemble models
19/05/2012 16:19:08 : INFO  : Building hh.d1pw4a_.model.1.pdb
19/05/2012 16:19:09 : INFO  : Building hh.c3o7pA_.model.2.pdb
19/05/2012 16:19:09 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7e23fddf87cb6512/hh.c3o7pA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7e23fddf87cb6512/c3o7pA_.1.pdb
19/05/2012 16:19:09 : INFO  : Building hh.c2xutC_.model.3.pdb
19/05/2012 16:19:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7e23fddf87cb6512/hh.c2xutC_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7e23fddf87cb6512/c2xutC_.3.pdb
19/05/2012 16:19:10 : INFO  : Building hh.c2gfpA_.model.4.pdb
19/05/2012 16:19:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/7e23fddf87cb6512/hh.c2gfpA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/7e23fddf87cb6512/c2gfpA_.4.pdb
19/05/2012 16:19:10 : INFO  : Building c3o7pA_.1.pdb
19/05/2012 16:19:11 : INFO  : Building d1pw4a_.2.pdb
19/05/2012 16:19:11 : INFO  : Building c2xutC_.3.pdb
19/05/2012 16:19:12 : INFO  : Building c2gfpA_.4.pdb
19/05/2012 16:19:12 : INFO  : Building d1pv7a_.5.pdb
19/05/2012 16:19:13 : INFO  : Building d1vhib_.6.pdb
19/05/2012 16:19:13 : INFO  : Building d1b3ta_.7.pdb
19/05/2012 16:19:13 : INFO  : Building c2jm2A_.8.pdb
19/05/2012 16:19:14 : INFO  : Building d1z8ga2.9.pdb
19/05/2012 16:19:14 : INFO  : Building c2oyaA_.10.pdb
19/05/2012 16:19:14 : INFO  : Building c3rnvA_.11.pdb
19/05/2012 16:19:15 : INFO  : Building c1r7gA_.12.pdb
19/05/2012 16:19:15 : INFO  : Building c1z8gA_.13.pdb
19/05/2012 16:19:15 : INFO  : Building d1riea_.14.pdb
19/05/2012 16:19:16 : INFO  : Building d1tkla_.15.pdb
19/05/2012 16:19:16 : INFO  : Building c1s6xA_.16.pdb
19/05/2012 16:19:16 : INFO  : Building c2nvgA_.17.pdb
19/05/2012 16:19:17 : INFO  : Building c2g9pA_.18.pdb
19/05/2012 16:19:17 : INFO  : Building d2nefa_.19.pdb
19/05/2012 16:19:17 : INFO  : Building c2aexA_.20.pdb
19/05/2012 16:19:27 : INFO  : Finished HH model building
19/05/2012 16:19:27 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/05/2012 16:19:33 : INFO  : html domain output complete ID '7e23fddf87cb6512'
19/05/2012 16:52:47 : INFO  : Run end  : Sat May 19 16:52:47 BST 2012
