Phyre 2 alignment of A1A5C7 with c2vjjA_

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Job Description | A1A5C7
Confidence | 6.90% | Date | Wed May 9 18:02:57 BST 2012
Rank | 64 | Aligned Residues | 23
% Identity | 43% | Template | c2vjjA_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:tailspike protein; | PDBTitle: tailspike protein of e.coli bacteriophage hk620 in complex2 with hexasaccharide
Resolution | 1.59 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | 220 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | W | D | Y | G | I | R | A | G | L | V | Q | N | V | . | . | . | . | . | . | . | . | . | . | V | S | K | W | D | L | V | C | D | N | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | Y | Q | Y | R | R | N | T | G | . | . | S | T | M | R | M | V | S | D | V | L | D | E | R | V | S | L | W | D | F | H | C | D | P | S
Template Known Secondary structure |  |  |  |  | G | G | G |  | T | T | . | . | S |  |  |  |  |  |  |  |  |  | T | T |  |  | B | G | G | G | T |  | B |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 128 | . | 130 | . | . | . | . | . | . |  |  | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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