Job Description A0AVI2 Confidence 23.43% Date Wed May 9 17:44:31 BST 2012 Rank 102 Aligned Residues 47 % Identity 21% Template c4drvA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:outer capsid protein vp4; PDBTitle: cell attachment protein vp8* of a human rotavirus specifically2 interacts with a-type histo-blood group antigen Resolution 1.56 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1765	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.									.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.
Query Sequence		K	T	A	N	V	D	L	V	D	D	N	L	S	R	E	K	T	S	D	I	Y	I	K	G	W	L	Y	G	L	E	K	D	M	Q	K	T	D	I	H	Y	H	S	L	T	G	E	A	D	F	N	.	.	.	.	.	.	.	.	W	R	F	I
Query Conservation																																																				.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		T	Q	I	G	R	V	A	E	G	T	N	T	T	D	R	W	F	A	C	V	L	V	.	.	.	.	.	.	.	E	P	N	V	Q	N	T	Q	R	E	Y	V	L	D	G	Q	T	V	Q	L	Q	V	S	N	N	S	S	T	L	W	K	F	I
Template Known Secondary structure		S	S	S									S	S	S									.	.	.	.	.	.	.		S	S											T	T												S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.								.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions