Job Description A0AVI2 Confidence 99.65% Date Wed May 9 17:44:31 BST 2012 Rank 4 Aligned Residues 88 % Identity 23% Template c3nsjA_ PDB info PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin Resolution 2.75 Å

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		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	Y	L	Q	L	F	I	Y	C	A	E	D	L	H	L	K	K	H	Q	S	V	N	P	Q	L	E	V	E	L	I	G	E	K	L	R	T	H	M	Q	T	Q	T	D	N	P	I	W	N	Q	I	L	T	F	R	I	Q	L	P	C	L	S	S	Y	I	K	F	R	V	L	D	C	R	K	K	D	C	P	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	H	L	V	V	S	N	F	R	A	E	H	L	W	G	D	Y	T	T	A	T	D	A	Y	L	K	V	F	F	G	G	Q	E	F	R	T	G	V	V	W	N	N	N	N	P	R	W	T	D	K	M	D	F	E	N	V	L	L	S	T	G	G	P	L	R	V	Q	V	W	D	A	D	Y	G	W	D	D	D	L
Template Known Secondary structure														S				S	S		S											T	T								B		S		S	S		B												T	T	T													S	S	S
Template Predicted Secondary structure
Template SS confidence
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		387	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	T	A	S	L	S	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	S	C	D	R	S	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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