Job Description A0AVI2 Confidence 99.48% Date Wed May 9 17:44:31 BST 2012 Rank 17 Aligned Residues 122 % Identity 20% Template c3m7fB_ PDB info PDB header:signaling protein/ligase Chain: B: PDB Molecule:e3 ubiquitin-protein ligase nedd4; PDBTitle: crystal structure of the nedd4 c2/grb10 sh2 complex Resolution 2.00 Å

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		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.							.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		A	Y	L	Q	L	F	I	Y	C	A	E	D	L	H	L	K	K	H	Q	S	V	N	P	Q	L	E	V	E	L	I	G	.	.	.	.	.	.	E	K	L	R	T	H	M	Q	T	Q	T	D	N	P	I	W	N	Q	I	L	T	F	R	I	Q	L	P	C	L	S	S	Y	I	K	F	R	V	L	D	C	R	K	K
Query Conservation																																	.	.	.	.	.	.
Alig confidence																		.	.														.	.	.	.	.	.																									.	.																.	.
Template Conservation																		.	.																																												.	.																.	.
Template Sequence		R	V	V	R	V	K	V	I	A	G	I	G	L	A	I	L	.	.	G	A	S	D	P	Y	V	R	V	T	L	Y	D	P	M	S	G	I	L	T	S	V	Q	T	K	T	I	K	K	S	L	N	P	K	W	N	E	E	I	L	F	R	V	.	.	L	P	Q	R	H	R	I	L	F	E	V	F	D	E	N	.	.
Template Known Secondary structure													S					.	.														T	T	T												S	S		S	S												.	.		T	T	T												.	.
Template Predicted Secondary structure																		.	.																																												.	.																.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	P	D	E	I	G	T	A	S	L	S	L	N	Q	I	S	S	T	G	E	E	I	E	G	K	Q	S	L	E	P	T	S	Y	T	P	R	V	Y	S	G	F	L	P	C	F	G	P	S	F	L	T	L	H	G	G	K	K	A	P	F	R	I	Q	E	E	G	A	C	I	P	D	S	V	R	D	G	L	A	Y
Query Conservation
Alig confidence		.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	D	D	F	L	G	Q	V	D	V	P	L	Y	P	L	P	T	E	P	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	D	F	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	R	S	H	K	S	R	V
Template Known Secondary structure		.	.											S		S			B					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B		S	S	T	T
Template Predicted Secondary structure		.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.																										220	.	.	.	.	.																			.	.	.	.	230	.	.	.	.
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	R	V	F	L	E	L	I	T	Q	I	K	S	Y	Q	D	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	Y	L	R	L	K	M	T	Y	L	P	T	H	L	P	H	P	P
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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