Job Description A0AVI2 Confidence 99.76% Date Wed May 9 17:44:31 BST 2012 Rank 3 Aligned Residues 121 % Identity 15% Template c3l9bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:otoferlin; PDBTitle: crystal structure of rat otoferlin c2a Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1		.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure			.																																						.	.
Query SS confidence			.																																						.	.
Query Sequence		M	.	L	R	L	V	V	Q	S	A	K	I	D	P	P	L	A	P	L	P	R	P	C	M	S	I	D	F	R	D	I	K	K	R	T	R	V	V	E	.	.	G	N	D	P	V	W	N	E	T	L	I	W	H	L	W	N	R	P	L	E	N	D	S	F	L	Q	V	T	L	Q	D	M	G	S	Q	K	K	E	R
Query Conservation			.																																						.	.
Alig confidence			.													.	.	.																							.	.																.
Template Conservation																.	.	.																																								.
Template Sequence		M	A	L	I	V	H	L	K	T	V	S	E	L	R	.	.	.	G	R	A	D	R	I	A	K	V	T	F	R	G	Q	S	F	Y	S	R	V	L	E	N	C	E	D	V	A	D	F	D	E	T	F	R	W	P	V	A	.	S	S	I	D	R	N	E	V	L	E	I	Q	I	F	N	Y	S	K	V	F	S	N	K
Template Known Secondary structure													S			.	.	.	S											T	T													S													S	.	S				T	T												T	T	S
Template Predicted Secondary structure																.	.	.																																								.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	G	L	A	T	V	L	L	K	P	L	L	K	Q	P	S	E	V	L	F	V	K	D	L	T	L	L	N	H	S	M	K	P	T	D	C	T	V	T	L	Q	V	A	H	M	S	N	Q	D	I
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		L	I	G	T	F	R	M	V	L	Q	K	V	V	E	.	.	.	E	N	R	V	E	V	S	D	T	L	I	D	D	N	N	A	I	I	K	T	S	L	S	M	E	V	R	Y	Q	A	A	D	G	T
Template Known Secondary structure										S						.	.	.		S											T	T	S																T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions