Job Description A0AVI2 Confidence 99.23% Date Wed May 9 17:44:31 BST 2012 Rank 42 Aligned Residues 128 % Identity 22% Template c2dmgA_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:kiaa1228 protein; PDBTitle: solution structure of the third c2 domain of kiaa12282 protein Resolution UNK

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		1466	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		E	Q	P	K	L	D	S	P	V	V	G	E	F	K	G	L	F	R	I	Y	P	F	P	E	N	P	E	A	P	K	P	P	L	Q	F	L	V	W	P	E	R	E	D	F	P	Q	P	C	L	V	R	V	Y	M	V	R	A	I	N	L	Q	P	Q	D	Y	N	G	L	C	D	P	Y	V	I	L	K	L	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.												.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		G	S	S	G	S	S	G	S	P	L	G	Q	I	Q	L	T	I	R	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	R	N	K	L	I	V	V	V	H	A	C	R	N	L	I	A	F	S	E	.	D	G	S	D	P	Y	V	R	M	Y	L	L	P	D
Template Known Secondary structure								S		S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T															S	S	T	.	T												S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																									.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.
		1543	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.			.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.			1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.																	.	.
Query SS confidence																																	.	.																	.	.
Query Sequence		G	K	T	E	L	G	N	R	D	M	Y	Q	P	N	T	L	D	P	I	F	G	M	M	F	E	L	T	C	N	I	P	.	.	L	E	K	D	L	E	I	Q	L	Y	D	F	D	L	F	S	.	.	P	D	D	K	I	G	T	T	V	I	D	L	E	N	R	L	L	S	G	F	G	A	H	C	G	L	S	K	S
Query Conservation																																	.	.																	.	.
Alig confidence																																	.	.																	.	.																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	R	S	G	R	R	K	T	H	V	S	K	K	T	L	N	P	V	F	D	Q	S	F	D	F	S	V	S	L	P	E	V	Q	R	R	T	L	D	V	A	V	K	N	S	G	G	F	L	S	K	D	K	G	L	L	G	K	V	L	V	A	L	A	S	E	E	L	A	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S	S									S		S	S																															S	S			S														S	T	T	T	T	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		1619	1620	.	.	.	.	.	.	.	.	.	1630	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	C	Q	S	G	P	F	R	W	R	D	Q	M	P
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	G	W	T	Q	W	Y	D	L	T	E
Template Known Secondary structure		.	.	.	.		B			B				B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						126	.	.	.	130	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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