Return to main results Retrieve Phyre Job Id

Job DescriptionQ8TC17
Confidence99.79%DateWed May 9 18:06:35 BST 2012
Rank13Aligned Residues70
% Identity34%Templatec2yt6A_
PDB info PDB header:cell cycleChain: A: PDB Molecule:adult male urinary bladder cdna, riken full- PDBTitle: solution structure of the sh3_1 domain of yamaguchi sarcoma2 viral (v-yes) oncogene homolog 1
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40. ........50..... ....60.........70..
Predicted Secondary structure 





















.








....










Query SS confidence 






































.













. . . .
















Query Sequence  SVALYSFQATESDELAFNKGDTLKILNMEDDQNWYKAEL. RGVEGFIPKNYIRV. . . . KPHPWYSGRISRQLAEE
Query Conservation   



 
      



  

   

       
     . 
  
 

   
  ....           
  
  
Alig confidence 






































.













....
















Template Conservation    

 

 
    


   

 
 

      

       
  
 


 

          
      
  

 
Template Sequence  FVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSIQAEEWYFGKMGRKDAES
Template Known Secondary structure  SS



SSTTS



TT

S
TT
SSS


TTTSSS
TTT


S




Template Predicted Secondary structure 





































Template SS confidence 










































































   30.........40.........50.........60.........70.........80.........90.........100....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions