Job Description P42681 Confidence 100.00% Date Thu Apr 26 09:52:37 BST 2012 Rank 30 Aligned Residues 238 % Identity 26% Template c3qa8A_ PDB info PDB header:immune system, signaling protein Chain: A: PDB Molecule:mgc80376 protein; PDBTitle: crystal structure of inhibitor of kappa b kinase beta Resolution 3.60 Å

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		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.							340	.	.
Predicted Secondary structure																										.														.	.																																.	.	.	.	.	.
Query SS confidence																										.														.	.																																.	.	.	.	.	.
Query Sequence		A	F	I	K	E	I	G	S	G	Q	F	G	V	V	H	L	G	E	W	R	S	H	I	Q	.	V	A	I	K	A	I	N	E	G	S	M	S	E	.	.	E	D	F	I	E	E	A	K	V	M	M	K	L	S	H	S	K	L	V	Q	L	Y	G	V	C	I	Q	R	K	P	L	.	.	.	.	.	.	Y	I	V
Query Conservation																										.														.	.																																.	.	.	.	.	.
Alig confidence																										.														.	.																																.	.	.	.	.	.
Template Conservation
Template Sequence		E	M	K	E	R	L	G	T	G	G	F	G	Y	V	L	R	W	I	H	Q	D	T	G	E	Q	V	A	I	K	Q	C	R	Q	E	L	S	P	K	N	R	E	R	W	C	L	E	I	Q	I	M	K	K	L	N	H	P	N	V	V	S	A	R	E	V	P	D	G	L	Q	K	L	A	P	N	D	L	P	L	L	A
Template Known Secondary structure									B		S	S	S	B							T	T	T	T										S																						B	T	T	B								T	T	T					T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.				.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.																																													.	.	.
Query SS confidence																			.	.																																													.	.	.
Query Sequence		T	E	F	M	E	N	G	C	L	L	N	Y	L	R	E	N	K	.	.	G	K	L	R	K	E	M	L	L	S	V	C	Q	D	I	C	E	G	M	E	Y	L	E	R	N	G	Y	I	H	R	D	L	A	A	R	N	C	L	V	S	S	T	C	I	.	.	.	V	K	I	S	D	F	G	M	T	R	Y	V	L	D
Query Conservation																			.	.																																													.	.	.
Alig confidence																			.	.																																													.	.	.
Template Conservation
Template Sequence		M	E	Y	C	E	G	G	D	L	R	K	Y	L	N	Q	F	E	N	C	C	G	L	K	E	G	P	I	R	T	L	L	S	D	I	S	S	A	L	R	Y	L	H	E	N	R	I	I	H	R	D	L	K	P	E	N	I	V	L	Q	P	G	P	Q	R	L	I	H	K	I	I	D	L	G	Y	A	K	E	L	D	Q
Template Known Secondary structure						S	S		B							S	S	S		T	T				S	S																			T	T	B							S	T	T							S	S	S							S						B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																																																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	Y	V	S	S	F	G	A	K	F	P	I	K	W	S	P	P	E	V	F	L	F	N	K	Y	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	V	F	T	E	G	K	M	P	F	E	.	N	K	S	N	L	Q	V	V	E	A	I	S	E	G	F	R	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																																				.							.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																																				.
Template Sequence		G	E	L	C	T	E	F	.	.	V	G	T	L	Q	Y	L	A	P	E	L	L	E	Q	K	K	Y	T	V	T	V	D	Y	W	S	F	G	T	L	A	F	E	C	I	T	.	G	F	R	P	F	L	P	N	W	Q	P	V	Q	W	H	G	K	V	R	I	V	V	Y	D	D	L	T	G	A	V	K	F	S	S	V
Template Known Secondary structure									.	.		S			T	T		S	S		S	S			S			S	T	T															S	.	S		S	S			S	S						S	S	T	T					S					S	S	S					S	S
Template Predicted Secondary structure									.	.																																				.
Template SS confidence
		176	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
						485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	Y	R	P	H	L	A	P	M	S	I	Y	E	V	M	Y	S	C	W	H	E	K	P	E	G	R	P	T
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		L	P	T	P	N	H	L	S	G	I	L	A	G	K	L	E	R	W	L	Q	C	M	L	M	W	H	Q	R	T	D	P	Q
Template Known Secondary structure		S			S					G	G	G												S		S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions