Job Description P42681 Confidence 99.60% Date Thu Apr 26 09:52:37 BST 2012 Rank 370 Aligned Residues 80 % Identity 20% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																															.	.	.	.	.	.
Query SS confidence																																				.																															.	.	.	.	.	.
Query Sequence		I	Y	E	W	Y	H	R	N	I	T	R	N	Q	A	E	H	L	L	R	Q	E	S	K	E	G	A	F	I	V	R	D	S	R	H	.	L	G	S	Y	T	I	S	V	F	M	G	A	R	R	S	T	E	A	A	I	K	H	Y	Q	I	K	K	N	D	S	.	.	.	.	.	.	G	Q	W	Y	V	A	E	R	H
Query Conservation																																				.																															.	.	.	.	.	.
Alig confidence								.												.																.											.	.	.	.	.																.	.	.	.	.	.
Template Conservation								.												.																											.	.	.	.	.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	.	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	.	.	.	.	.	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q
Template Known Secondary structure				T	T			.												.	T	T	S		T	T								S	S		T	T									.	.	.	.	.		T	T											S		S	S	T	T	S			S					T	T
Template Predicted Secondary structure								.												.																											.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.						.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	Q	S	I	P	E	L	I	W	Y	H	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q
Template Known Secondary structure				S	S								T
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions