246 c2vagA_ Probab=100.00  E-value=1.4e-39  Score=235.95  Aligned_columns=253  Identities=19%

Q ss_pred             EECHHHEEEEECCCCCCCEEEEEEEECC--CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCE------EEEEEEEEEC
Q ss_conf             2368867884201427980799999879--9589999998101398999999999865189968------2699838668
Q batch____       265 EIDPSELAFIKEIGSGQFGVVHLGEWRS--HIQVAIKAINEGSMSEEDFIEEAKVMMKLSHSKL------VQLYGVCIQR  336 (527)
Q Consensus       265 ei~~~~~~~~~~LG~G~fG~V~~~~~~~--~~~VAiK~lk~~~~~~~~f~~E~~~l~~l~HpnI------v~l~g~~~~~  336 (527)
                      ++-.+++++.++||+|+||.||+|.++.  +..||||+++.+....+.+++|+.+|+.|+|+|+      +.+.+.....
T Consensus         9 ~~l~~~Y~i~~~LG~G~fG~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~Ei~il~~l~h~~~~~~~~~~~~~~~~~~~   88 (330)
T c2vagA_           9 DVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH   88 (330)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET
T ss_pred             CEECCCEEEEEEEEECCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCC
T ss_conf             48678259999987628848999999767983999999839905689999999999984312223312220000123332


Q ss_pred             CEEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCCCCEEECC
Q ss_conf             95899998889884999998358898899999999999999886540767860443444333467423110233144423
Q batch____       337 KPLYIVTEFMENGCLLNYLRENKGKLRKEMLLSVCQDICEGMEYLERNGYIHRDLAARNCLVSSTCIVKISDFGMTRYVL  416 (527)
Q Consensus       337 ~~~~iv~E~~~~GsL~~~L~~~~~~l~~~~~~~~~~qia~gl~yLh~~~iiHrdlk~~Nili~~~~~~ki~DFGla~~~~  416 (527)
                      ..++++++++..+.+..................+..+++.++.++|..+++|+|+++.|++++.++..++.||+.+....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~nil~~~~~~~~~~~~~~~~~~~  168 (330)
T c2vagA_          89 GHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNKRDERTLI  168 (330)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEECCCEEEEES
T ss_pred             CEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCC
T ss_conf             00001221123675211122211101365655555445555543110122223455415898578862000345433444


Q ss_pred             CCCCEEEEECC----------CCHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHC-----
Q ss_conf             78712353045----------586768977983799975789999999999999488899997798999999980-----
Q batch____       417 DDEYVSSFGAK----------FPIKWSPPEVFLFNKYSSKSDVWSFGVLMWEVFTEGKMPFENKSNLQVVEAISE-----  481 (527)
Q Consensus       417 ~~~~~~~~~~~----------~~~~y~APE~l~~~~~s~ksDVwS~Giil~Ei~t~G~~P~~~~~~~e~~~~i~~-----  481 (527)
                      ...........          ....+.+||......++.++|+|++|+++|++.+ ++.|++..+..+....+..     
T Consensus       169 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~  247 (330)
T c2vagA_         169 NPDIKVVDFGSATYDDEHHSTLVRHYRAPEVILALGWSQPCDVWSIGCILIEYYL-GFTVFPTHDSKEHLAMMERILGPL  247 (330)
T ss_dssp             CCCEEECCCSSCEETTSCCCSCCCCSCCHHHHTTSCCSTHHHHHHHHHHHHHHHH-SSCSCCCSCHHHHHHHHHHHHCSC
T ss_pred             CCCCEEECCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCEEEEEEECCCC-CCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             4321000146633267542001210232100000111123542102258731004-889887589689999998513889


Q ss_pred             --------------------------------------CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHH
Q ss_conf             --------------------------------------8888887458999999999863789667698999999
Q batch____       482 --------------------------------------GFRLYRPHLAPMSIYEVMYSCWHEKPEGRPTFAELLR  518 (527)
Q Consensus       482 --------------------------------------g~~~~~p~~~p~~l~~li~~C~~~dP~~RPs~~~i~~  518 (527)
                                                            ....+.+..+++++.+||.+||+.||++|||+.+|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~elL~  322 (330)
T c2vagA_         248 PKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALK  322 (330)
T ss_dssp             CHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf             988974420121235465665321000111001233310023565458999999999866588111776789967


