 |
| Job Description | P42681 | | Confidence | 99.83% | Date | Thu Apr 26 09:52:37 BST 2012 |
| Rank | 341 | Aligned Residues | 100 |
| % Identity | 27% | Template | c2lctA_ |
| PDB info |
PDB header:signaling protein | Chain: A: PDB Molecule:proto-oncogene vav; |
PDBTitle: solution structure of the vav1 sh2 domain complexed with a syk-derived2 doubly phosphorylated peptide
|
| Resolution | UNK |
|
 |
|   |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | |
. | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
K | I | T | N | L | E | I | Y | E | W | Y | H | R | N | I | T | R | N | Q | A | E | H | L | L | R | Q | E | S | K | E | G | A | F | I | V | R | D | S | . |
R | H | L | G | S | Y | T | I | S | V | F | M | G | A | R | R | S | T | E | A | A | I | K | H | Y | Q | I | K | K | N | D | S | G | Q | W | Y | V | A | E | R | H |
| Query Conservation |   |
  |   |   |   |
|   |   |   |   |
|
|
|
|   |
|   |
|   |   |
|
|   |
|
|   |   |   |   |   |   |
|   |
|
|
|
|   |
| . |   |   |   |
|   |
|   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |
|   |   |   |   |
|
|   |
|   |
|
|
|   |   |
|
|   |
|
|   | . |   |   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|   |   | . | . | . | . | . | . |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   | . |   |   |
|   |   |   |   |
| Template Sequence |   |
H | M | Q | D | L | S | V | H | L | W | Y | A | G | P | M | E | R | A | G | A | E | S | I | L | A | . |
N | R | S | D | G | T | F | L | V | R | Q | R | V | K | D | A | A | E | F | A | I | S | I | K | Y | . |
. |
. |
. |
. |
. |
N | V | E | V | K | H | I | K | I | M | T | A | E | G | L | . |
Y | R | I | T | E | K | K |
| Template Known Secondary structure |   |
| S | S |
| S | T | T | S | S | S |  |  |  | S |
|
|  |  |  |  |  |  |  |  |  | . |  | S |
| T | T | B |  |  |  |  |  |
|
| S | S | S |
| S |  |  |  |  |  |  |
| . | . | . | . | . | . | S | S | S |  |  |  |  |  |
|  |  |  | T | T |  | . |  |  | S | S | S | S | S |
| Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  | . |  |  |  |
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
662 | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | |
. | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | |
. | . | . | 730 | . | . | . |
|   |
|   |   |
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 240 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | F | Q | S | I | P | E | L | I | W | Y | H | Q | H | N | A | . |
. |
. |
. |
. |
A | G | L | M | T | R | L | R | Y | P | V | G | L |
| Query Conservation |   |
  |
|   |
|
|   |
|
|
|   |   |
|   |   |   |   | . | . | . | . | . |   |
|
|   |   |   |
|   |   |
|   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
| Template Sequence |   |
A | F | R | G | L | T | E | L | V | E | F | Y | Q | Q | N | S | L | K | D | C | F | K | S | L | D | T | T | L | Q | F | P | F | K | E |
| Template Known Secondary structure |   |
 |  | S | S |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  | S | S | S |
|
|
|
|
|
| B |
| S |
|
|
| Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
734 | . | . | . | . | . | 740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|