Job Description P42681 Confidence 100.00% Date Thu Apr 26 09:52:37 BST 2012 Rank 65 Aligned Residues 246 % Identity 25% Template c2a1aB_ PDB info PDB header:protein synthesis/transferase Chain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex Resolution 2.80 Å

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		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																									.																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	E	L	A	F	I	K	E	I	G	S	G	Q	F	G	V	V	H	L	G	E	W	.	R	S	H	I	Q	V	A	I	K	A	I	N	E	G	S	M	S	E	E	D	F	I	E	E	A	K	V	M	M	K	L	S	H	S	K	L	V	Q	L	Y	G	V	C	I	Q	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.
Template Sequence		G	M	D	F	K	E	I	E	L	I	G	S	G	G	F	G	Q	V	F	K	A	K	H	R	I	D	G	K	T	Y	V	I	K	R	V	K	Y	N	N	.	.	.	E	K	A	E	R	E	V	K	A	L	A	K	L	D	H	V	N	I	V	H	Y	N	G	C	W	D	G	F	D	Y	D	P	E	T	S	S	R	S
Template Known Secondary structure															S	S									S	S	S													S	.	.	.	G	G	G	G							T	T				T	T	B														T	T
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
			336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure		.																								.
Query SS confidence		.																								.
Query Sequence		.	R	K	P	L	Y	I	V	T	E	F	M	E	N	G	C	L	L	N	Y	L	R	E	N	.	K	G	K	L	R	K	E	M	L	L	S	V	C	Q	D	I	C	E	G	M	E	Y	L	E	R	N	G	Y	I	H	R	D	L	A	A	R	N	C	L	V	S	S	T	C	I	V	K	I	S	D	F	G	M	T	R
Query Conservation		.																								.
Alig confidence		.																								.
Template Conservation
Template Sequence		K	T	K	C	L	F	I	Q	M	E	F	C	D	K	G	T	L	E	Q	W	I	E	K	R	R	G	E	K	L	D	K	V	L	A	L	E	L	F	E	Q	I	T	K	G	V	D	Y	I	H	S	K	K	L	I	N	R	D	L	K	P	S	N	I	F	L	V	D	T	K	Q	V	K	I	G	D	F	G	L	V	T
Template Known Secondary structure														T	T		B									T	T	S																								T	T				T	T		S	G	G	G						T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	L	D	D	E	Y	V	S	S	F	G	A	K	F	P	I	K	W	S	P	P	E	V	F	L	F	N	K	Y	S	S	K	S	D	V	W	S	F	G	V	L	M	W	E	V	F	T	E	G	K	M	P	F	E	N	K	S	N	L	Q	V	V	E	A	I	S	E	G	F	R	L	Y	R	P	H	L	A	P	M
Query Conservation
Alig confidence																	.	.	.																															.						.	.	.	.	.
Template Conservation																	.	.	.																															.						.	.	.	.	.
Template Sequence		S	L	K	N	D	G	K	R	R	S	K	G	T	L	R	.	.	.	Y	M	S	P	E	Q	I	S	S	Q	D	Y	G	K	E	V	D	L	Y	A	L	G	L	I	L	A	E	L	L	H	.	V	C	D	T	A	.	.	.	.	.	F	E	T	S	K	F	F	T	D	L	R	D	G	I	I	S	D	I	F	D	K
Template Known Secondary structure			S	S			S						S			T	.	.	.	T	S						S		S				T																S	.			S	S		.	.	.	.	.												T	T				T	T	S
Template Predicted Secondary structure																	.	.	.																															.						.	.	.	.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.				.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.						.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	Y	E	V	M	Y	S	C	W	H	E	K	P	E	G	R	P	T	F	A	E	L	L	R	A	V	T	E	I	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	K	T	L	L	Q	K	L	L	S	K	K	P	E	D	R	P	N	T	S	E	I	L	R	T	L	T	V	W	K	K
Template Known Secondary structure											T		S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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