Job Description P16885 Confidence 97.81% Date Sat Jun 16 10:20:27 BST 2012 Rank 344 Aligned Residues 56 % Identity 36% Template c3rebD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: hiv-1 nef protein in complex with engineered hck-sh3 domain Resolution 3.45 Å

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		774	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	A	L	Y	D	Y	K	A	K	R	S	D	E	L	S	F	C	R	G	A	L	I	H	N	V	S	K	E	P	G	G	W	W	K	G	D	Y	G	T	R	I	Q	Q	Y	F	P	S	N	Y	V	E	D	I	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	A	L	Y	D	Y	V	S	W	S	P	D	D	L	S	F	Q	K	G	D	Q	M	V	V	L	E	E	S	G	E	W	W	K	A	R	S	L	A	T	R	K	E	G	Y	I	P	S	N	Y	V	A	R	V	D	S
Template Known Secondary structure					S	S		B			S	S	T	T	B			B		T	T									S	S	S							T	T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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