Job Description P16885 Confidence 99.67% Date Sat Jun 16 10:20:27 BST 2012 Rank 30 Aligned Residues 169 % Identity 13% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.		.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.				.	.	.	600	.	.	.	.	.	.
Predicted Secondary structure																																																	.																				.	.	.
Query SS confidence																																																	.																				.	.	.
Query Sequence		K	W	F	H	K	K	V	E	K	R	T	S	A	E	K	L	L	Q	E	Y	C	M	E	T	G	G	K	D	G	T	F	L	V	R	E	S	E	T	F	P	N	D	Y	T	L	S	F	.	W	R	S	G	R	V	Q	H	C	R	I	R	S	T	M	E	G	G	T	.	.	.	L	K	Y	Y	L	T	D	N	L	T
Query Conservation																																																	.																				.	.	.
Alig confidence						.												.	.	.	.	.	.	.																									.																				.	.	.
Template Conservation						.												.	.	.	.	.	.	.
Template Sequence		P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	.	.	.	.	.	.	.	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R
Template Known Secondary structure		T	T			.												.	.	.	.	.	.	.	T	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T
Template Predicted Secondary structure						.												.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10		.	.	.	.	.	.	.	.	.	20	.								.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.		.	.	.	.	.	.	.	670	.	.					.	.	.	.	.	.	.	680	.
Predicted Secondary structure																																																										.											.	.	.	.
Query SS confidence																																																										.											.	.	.	.
Query Sequence		F	S	S	I	Y	A	L	I	Q	H	Y	R	E	T	H	L	R	C	A	E	F	E	L	R	L	T	D	P	V	P	N	P	N	P	H	E	S	K	P	W	Y	Y	D	S	L	S	R	G	E	A	E	D	M	L	M	R	.	I	P	R	D	G	A	F	L	I	R	.	.	.	.	K	R	E	G	S	D	S	Y	A
Query Conservation																																																										.											.	.	.	.
Alig confidence															.											.	.	.	.	.	.	.	.	.	.	.									.	.												.											.	.	.	.
Template Conservation															.											.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		Y	H	D	L	D	Q	I	I	V	E	Y	L	Q	.	N	K	I	R	L	L	N	E	L	T	.	.	.	.	.	.	.	.	.	.	.	S	N	E	K	F	K	A	G	.	.	T	K	K	E	V	V	K	F	I	E	D	Y	S	K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G	W	F	Y
Template Known Secondary structure			S	S								T			.											.	.	.	.	.	.	.	.	.	.	.	T	S	T	T				S	.	.																	T	T										T	T	S	T	T
Template Predicted Secondary structure															.											.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.												.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		682	.	.	.	.	.			.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		I	T	F	R	A	R	.	.	G	K	V	K	H	C	R	I	N	R	D	G	R	H	F	V	L	G	T	S	A	Y	F	E	S	L	V	E	L	V	S	Y	Y	E	K
Query Conservation								.	.
Alig confidence								.	.																						.
Template Conservation																															.
Template Sequence		L	I	F	K	L	N	A	E	S	K	L	Y	I	W	N	V	K	L	T	H	T	G	F	F	L	V	N	Y	N	.	Y	P	T	V	I	Q	L	C	N	G	F	K	T
Template Known Secondary structure						S	S	T	T	S											S	S	S				T	T			.		S	S
Template Predicted Secondary structure																															.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions