Job Description P16885 Confidence 99.36% Date Sat Jun 16 10:20:27 BST 2012 Rank 47 Aligned Residues 117 % Identity 23% Template c3nsjA_ PDB info PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin Resolution 2.75 Å

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		1055	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		S	Q	R	K	I	L	M	T	L	T	V	K	V	L	G	A	R	H	L	P	K	L	G	R	S	I	A	C	P	F	V	E	V	E	I	C	G	A	E	Y	D	N	N	K	F	K	T	T	V	V	N	D	N	G	L	S	P	I	W	A	P	T	Q	E	K	V	T	F	E	I	Y	D	P	N	L	A	.	F	L	R
Query Conservation																																																																														.
Alig confidence																																					.	.	.	.	.													.							.	.	.															.
Template Conservation																																					.	.	.	.	.													.							.	.	.
Template Sequence		P	R	Q	R	G	L	A	H	L	V	V	S	N	F	R	A	E	H	L	W	G	D	Y	T	T	A	T	D	A	Y	L	K	V	F	F	.	.	.	.	.	G	G	Q	E	F	R	T	G	V	V	W	N	.	N	N	N	P	R	W	.	.	.	T	D	K	M	D	F	E	N	V	L	L	S	T	G	G	P	L	R
Template Known Secondary structure		B	S	S	T	T													S				S	S		S											.	.	.	.	.	T	T								B		S	.		S	S		B		.	.	.											T	T	T
Template Predicted Secondary structure																																					.	.	.	.	.													.							.	.	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.						.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460				.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		1134	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	V	Y	E	E	D	M	F	S	D	P	N	F	L	A	H	A	T	Y	P	I	K	A	V	K	S	G	F	R	S	V	P	L	K	N	G	Y	S	E	D	I	E	L	A	S	L	L	V	F	C	E	M	R	P	V
Query Conservation
Alig confidence																										.	.	.													.	.	.	.	.	.
Template Conservation																										.	.	.													.	.	.	.	.	.
Template Sequence		V	Q	V	W	D	A	D	Y	G	W	D	D	D	L	L	G	S	C	D	R	S	P	H	S	.	.	.	G	F	H	E	V	T	C	E	L	N	H	G	.	.	.	.	.	.	R	V	K	F	S	Y	H	A	K	C	L
Template Known Secondary structure									S	S	S														S	.	.	.										S	S	S	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.													.	.	.	.	.	.
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.				.	.	.	.	.	.	.	510	.	.	.	.							.	.	.	.	.	520	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions