Job Description P16885 Confidence 99.35% Date Sat Jun 16 10:20:27 BST 2012 Rank 49 Aligned Residues 117 % Identity 15% Template c3l9bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:otoferlin; PDBTitle: crystal structure of rat otoferlin c2a Resolution 1.95 Å

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		1061	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		M	T	L	T	V	K	V	L	G	A	R	H	L	P	K	L	G	R	S	I	A	C	P	F	V	E	V	E	I	C	G	A	E	Y	D	N	N	K	F	K	T	T	V	V	N	D	N	G	L	S	P	I	W	A	P	T	Q	E	K	V	T	F	E	I	Y	D	P	N	L	A	.	.	F	L	R	F	V	V	Y	E
Query Conservation																																																																								.	.
Alig confidence																.	.	.	.												.	.	.	.	.																				.	.	.															.	.
Template Conservation																.	.	.	.												.	.	.	.	.																				.	.	.
Template Sequence		M	A	L	I	V	H	L	K	T	V	S	E	L	R	.	.	.	.	G	R	A	D	R	I	A	K	V	T	F	.	.	.	.	.	R	G	Q	S	F	Y	S	R	V	L	E	N	C	E	D	V	A	D	F	.	.	.	D	E	T	F	R	W	P	V	A	S	S	I	D	R	N	E	V	L	E	I	Q	I	F	N
Template Known Secondary structure													S			.	.	.	.	S											.	.	.	.	.	T	T													S					.	.	.									S	S				T	T
Template Predicted Secondary structure																.	.	.	.												.	.	.	.	.																				.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		1139	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.				.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		E	D	M	F	S	D	P	N	F	L	A	H	A	T	Y	P	I	K	A	V	K	S	G	F	R	S	.	.	.	V	P	L	K	N	G	Y	S	E	D	I	E	L	A	S	L	L	V	F	C	E	M	R	P	V	L
Query Conservation																												.	.	.
Alig confidence																												.	.	.													.
Template Conservation																																											.
Template Sequence		Y	S	K	V	F	S	N	K	L	I	G	T	F	R	M	V	L	Q	K	V	V	E	E	N	R	V	E	V	S	D	T	L	I	D	D	N	N	A	I	I	K	.	T	S	L	S	M	E	V	R	Y	Q	A	A	D
Template Known Secondary structure				T	T	S												S							S											T	T	S					.												T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions