Job Description P16885 Confidence 98.66% Date Sat Jun 16 10:20:27 BST 2012 Rank 169 Aligned Residues 89 % Identity 12% Template c3gxxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	E	K	W	F	H	K	K	V	E	K	R	T	S	A	E	K	L	L	Q	E	Y	C	M	E	T	G	G	K	D	G	T	F	L	V	R	E	S	E	T	F	P	N	D	Y	T	L	S	F	W	R	S	G	R	V	Q	H	C	R	I	R	S	T	M	E	G	G	T	L	K	Y	Y	L	T	D	N	L	T	F
Query Conservation
Alig confidence										.											.	.	.	.	.	.	.
Template Conservation										.											.	.	.	.	.	.	.
Template Sequence		I	N	H	P	Y	Y	F	P	.	F	N	G	K	Q	A	E	D	Y	L	.	.	.	.	.	.	.	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	X	E	K	E	X	G	K	V	L	V	V	E	G	Q	R	Y
Template Known Secondary structure			T		T	T	B			.											.	.	.	.	.	.	.	T	T	S		T	T									S	T	T											T	T																				S	S	S
Template Predicted Secondary structure										.											.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.								.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	I	Y	A	L	I	Q	H	Y	R	E	T	H	L	R	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	D	L	D	Q	I	I	V	E	Y	L	Q	N	K	I	R	L
Template Known Secondary structure		S	S															T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions