 |
| Job Description | Q13601 | | Confidence | 97.10% | Date | Wed May 9 17:52:34 BST 2012 |
| Rank | 30 | Aligned Residues | 50 |
| % Identity | 18% | Template | c1ztgD_ |
| PDB info |
PDB header:dna, rna binding protein/dna | Chain: D: PDB Molecule:poly(rc)-binding protein 1; |
PDBTitle: human alpha polyc binding protein kh1
|
| Resolution | 3.00 Å |
|
|   |   |
162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . |
| Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  | . | . | . | . | . |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
Q | R | L | I | G | P | K | G | S | T | L | K | A | L | E | L | L | T | N | C | Y | I | M | V | Q | . |
. |
. |
. |
. |
G | N | T | V | S | A | I | G | P | F | S | G | L | K | E | V | R | K | V | V | L | D | T | M | K |
| Query Conservation |   |
  |
|
|
|
|   |   |
|   |
|   |   |   |
|
|   |
|
|   |   |   |
|   |
|   | . | . | . | . | . |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|
|
|   |   |
|   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |
| Template Sequence |   |
G | S | I | I | G | K | K | G | E | S | V | K | R | I | R | E | E | S | G | A | R | I | N | I | S | E | G | N | C | P | E | R | I | I | T | L | T | G | P | T | N | A | I | F | K | A | F | A | M | I | I | D | K | L | E |
| Template Known Secondary structure |   |
 |  |  | T |
| T | T | T |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
| S | S |
| S |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
26 | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|