Job Description P27986 Confidence 99.80% Date Tue Apr 3 14:59:12 BST 2012 Rank 105 Aligned Residues 84 % Identity 23% Template c3gxxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.		.	.	.	.	.	.	660	.		.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680			.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.									.																				.	.
Query SS confidence																																	.									.																				.	.
Query Sequence		T	W	N	V	G	S	S	N	R	N	K	A	E	N	L	L	R	G	K	R	D	G	T	F	L	V	R	E	S	S	K	.	Q	G	C	Y	A	C	S	V	.	V	V	D	G	E	V	K	H	C	V	I	N	K	T	A	T	G	Y	G	.	.	F	A	E	P	Y	N	L	Y	S	S	L	K	E	L	V	L	H	Y
Query Conservation																																	.									.																				.	.
Alig confidence						.																											.									.																				.	.
Template Conservation						.
Template Sequence		P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	X	E	K	E	X	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I	V	E	Y
Template Known Secondary structure		T	T	B		.												T	T	S		T	T									S	T	T											T	T																				S	S	S				S	S
Template Predicted Secondary structure						.
Template SS confidence
		11	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		699	700	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	T	S	L	V	Q	H	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	N	K	I	R	L	L	N
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions