Job Description A0FGR8 Confidence 99.86% Date Sat Jun 16 10:27:15 BST 2012 Rank 21 Aligned Residues 194 % Identity 21% Template c3nsjA_ PDB info PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin Resolution 2.75 Å

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		327	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.															.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.			.	.
Predicted Secondary structure																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.							.	.
Query SS confidence																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.							.	.
Query Sequence		L	E	I	N	W	T	G	L	T	N	L	L	D	V	.	P	G	L	N	G	L	S	D	T	I	I	L	D	I	I	S	N	Y	L	V	L	P	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	V	P	L	V	S	E	V	Q	I	A	Q	L	R	F	.	P	V	P	K	G	V	.	.	L	R
Query Conservation																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.							.	.
Alig confidence																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.							.	.
Template Conservation
Template Sequence		V	D	Y	S	L	E	P	L	H	T	L	L	E	E	Q	N	P	K	R	E	A	L	R	Q	A	I	S	H	Y	I	M	S	R	A	R	W	Q	N	C	S	R	P	C	R	S	G	Q	H	K	S	S	H	D	S	C	Q	C	E	C	Q	D	S	K	V	T	N	Q	D	C	C	P	R	Q	R	G	L	A	H	L	V
Template Known Secondary structure									G	G	G	G	S		T	T		T																T		B				T	T	S			B	T	T					S	S		T	T					S		T	T	T	B		G	G	G		B	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.		.	.	.
Predicted Secondary structure																																																																	.													.
Query SS confidence																																																																	.													.
Query Sequence		I	H	F	I	E	A	Q	D	L	Q	G	K	D	T	Y	L	K	G	L	V	K	G	K	S	D	P	Y	G	I	I	R	V	G	N	Q	I	F	Q	S	R	V	I	K	E	N	L	S	P	K	W	N	E	V	Y	E	A	L	V	Y	E	H	P	G	.	Q	E	L	E	I	E	L	F	D	E	D	P	.	D	K	D
Query Conservation																																																																	.													.
Alig confidence													.			.	.	.	.	.	.																																												.													.
Template Conservation													.			.	.	.	.	.	.
Template Sequence		V	S	N	F	R	A	E	H	L	W	G	.	D	Y	.	.	.	.	.	.	T	T	A	T	D	A	Y	L	K	V	F	F	G	G	Q	E	F	R	T	G	V	V	W	N	N	N	N	P	R	W	T	D	K	M	D	F	E	N	V	L	L	S	T	G	G	P	L	R	V	Q	V	W	D	A	D	Y	G	W	D	D
Template Known Secondary structure									S				.	S	S	.	.	.	.	.	.		S											T	T								B		S		S	S		B												T	T	T													S	S	S
Template Predicted Secondary structure													.			.	.	.	.	.	.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.		.	430							.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	L	G	S	L	M	I	D	L	I	E	V	E	K	E	R	L	L	D	E	W	F	T	L	D	E	V	P	K	G	K	L	H	L	R	L	E	W	L	T	L	M	P	N	A	S	N	L	D	K	V	L	T	D	I	K	A	D	K	D	Q	A	N	D	G
Query Conservation
Alig confidence														.	.	.	.												.
Template Conservation														.	.	.	.												.
Template Sequence		D	L	L	G	S	C	D	R	S	P	H	S	.	.	.	.	G	F	H	E	V	T	C	E	L	N	H	.	G	R	V	K	F	S	Y	H	A	K	C	L	P	H	L	T	G	G	T	C	L	E	Y	A	P	Q	G	L	L	G	D	P	P	G	N	R	S	G
Template Known Secondary structure													S	.	.	.	.										S	S	.	S												T	T			S	T	T	S								B	S	S					S	S
Template Predicted Secondary structure														.	.	.	.												.
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.					.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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