Job Description A0FGR8 Confidence 99.82% Date Sat Jun 16 10:27:15 BST 2012 Rank 35 Aligned Residues 113 % Identity 23% Template c3l9bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:otoferlin; PDBTitle: crystal structure of rat otoferlin c2a Resolution 1.95 Å

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		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.	.	.			.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure																																																					.														.	.
Query SS confidence																																																					.														.	.
Query Sequence		G	V	L	R	I	H	F	I	E	A	Q	D	L	Q	G	K	D	T	Y	L	K	G	L	V	K	G	K	S	D	P	Y	G	I	I	R	V	G	N	Q	I	F	Q	S	R	V	I	K	E	N	L	S	.	P	K	W	N	E	V	Y	E	A	L	V	Y	E	.	.	H	P	G	Q	E	L	E	I	E	L	F	D	E
Query Conservation																																																					.														.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																												.														.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	L	I	V	H	L	K	T	V	S	E	L	.	.	.	.	.	.	.	.	.	.	.	R	G	R	A	D	R	I	A	K	V	T	F	R	G	Q	S	F	Y	S	R	V	L	E	N	C	E	D	V	A	D	F	D	E	T	F	R	W	P	V	A	S	S	I	D	R	N	E	V	L	E	I	Q	I	F	N	Y
Template Known Secondary structure													S		.	.	.	.	.	.	.	.	.	.	.		S											T	T													S													S	S				T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.												.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		462	.		.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.					.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure				.																																	.	.	.	.
Query SS confidence				.																																	.	.	.	.
Query Sequence		D	P	.	D	K	D	D	F	L	G	S	L	M	I	D	L	I	E	V	E	K	E	R	L	L	D	E	W	F	T	L	D	E	V	P	.	.	.	.	K	G	K	L	H	L	R	L	E	W	L	T	L
Query Conservation				.																																	.	.	.	.
Alig confidence				.																																	.	.	.	.
Template Conservation
Template Sequence		S	K	V	F	S	N	K	L	I	G	T	F	R	M	V	L	Q	K	V	V	E	E	N	R	V	E	V	S	D	T	L	I	D	D	N	N	A	I	I	K	T	S	L	S	M	E	V	R	Y	Q	A	A
Template Known Secondary structure			T	T	S												S							S											T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions