Job Description P42684 Confidence 100.00% Date Thu Apr 26 09:29:57 BST 2012 Rank 221 Aligned Residues 239 % Identity 29% Template c4aguC_ PDB info PDB header:transferase Chain: C: PDB Molecule:cyclin-dependent kinase-like 1; PDBTitle: crystal structure of the human cdkl1 kinase domain Resolution 2.40 Å

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		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.				.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		T	D	I	T	M	K	H	K	L	G	G	G	Q	Y	G	E	V	Y	V	G	V	W	K	K	Y	S	L	T	V	A	V	K	T	L	K	E	.	.	.	D	T	M	E	V	E	E	F	L	K	E	A	A	V	M	K	E	I	K	H	P	N	L	V	Q	L	L	G	V	C	T	L	E	P	P	F	Y	I	V	T	E
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.
Template Conservation
Template Sequence		E	K	Y	E	K	I	G	K	I	G	E	G	S	Y	G	V	V	F	K	C	R	N	R	D	T	G	Q	I	V	A	I	K	K	F	L	E	S	E	D	D	P	V	I	K	K	I	A	L	R	E	I	R	M	L	K	Q	L	K	H	P	N	L	V	N	L	L	E	V	F	R	R	K	R	R	L	H	L	V	F	E
Template Known Secondary structure														S	S									T	T	T													S	S																					T	T	B										T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	P	Y	G	N	L	L	D	Y	L	R	E	C	N	R	E	E	V	T	A	V	V	L	L	Y	M	A	T	Q	I	S	S	A	M	E	Y	L	E	K	K	N	F	I	H	R	D	L	A	A	R	N	C	L	V	G	E	N	H	V	V	K	V	A	D	F	G	L	S	R	L	M	T	G	D	T	Y	T	A	H
Query Conservation
Alig confidence																		.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	C	D	H	T	V	L	H	E	L	D	R	Y	Q	R	G	.	.	V	P	E	H	L	V	K	S	I	T	W	Q	T	L	Q	A	V	N	F	C	H	K	H	N	C	I	H	R	D	V	K	P	E	N	I	L	I	T	K	H	S	V	I	K	L	C	D	F	G	F	A	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S										T	S	S		.	.																							T	T							S	G	G	G					T	T	S								T	T		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	A	K	F	P	I	K	W	T	A	P	E	S	L	.	A	Y	N	T	F	S	I	K	S	D	V	W	A	F	G	V	L	L	W	E	I	A	T	Y	G	M	S	P	Y	P	G	I	D	L	S	Q	V	Y	D	L	L	E	K	G	Y	R	M	E	Q	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.														.																								.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																						.
Template Sequence		.	.	R	L	L	T	R	W	Y	R	S	P	E	L	L	V	G	D	T	Q	Y	G	P	P	V	D	V	W	A	I	G	C	V	F	A	E	L	L	S	.	G	V	P	L	W	P	G	K	S	D	V	D	Q	L	Y	L	I	R	K	T	L	G	D	L	I	P	R	H	Q	Q	V	F	S	T	N	Q	Y	F	S	G
Template Known Secondary structure		.	.					G	G	G							T	T		S				T																	.	S	S		S				S	S														S											T		G	G	G	T	T
Template Predicted Secondary structure		.	.																																						.
Template SS confidence
				149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
																			509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	C	P	P	K	V	Y	E	L	M	R	A	C	W	K	W	S	P	A	D	R	P	S	F	A	E	T	H	Q	A	F	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	I	P	D	P	E	D	M	E	P	L	E	L	K	F	P	N	I	S	Y	P	A	L	G	L	L	K	G	C	L	H	M	D	P	T	E	R	L	T	C	E	Q	L	L	H	H	P	Y
Template Known Secondary structure								S	S									T	T	S														S	S	T	T	T	S							T	T	S	G	G
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions