Job Description P42684 Confidence 99.53% Date Thu Apr 26 09:29:57 BST 2012 Rank 369 Aligned Residues 78 % Identity 27% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																																			.										.	.	.	.	.	.
Query SS confidence																																																			.										.	.	.	.	.	.
Query Sequence		K	H	S	W	Y	H	G	P	V	S	R	S	A	A	E	Y	L	L	S	S	L	I	N	G	S	F	L	V	R	E	S	E	S	S	P	G	Q	L	S	I	S	L	R	Y	E	G	R	V	Y	.	H	Y	R	I	N	T	T	A	D	.	.	.	.	.	.	G	K	V	Y	V	T	A	E	S	R	F	S	T	L	A
Query Conservation																																																			.										.	.	.	.	.	.
Alig confidence								.																																											.										.	.	.	.	.	.
Template Conservation								.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D
Template Known Secondary structure				T	T			.												T	T	S		T	T								S	S		T	T										T	T											S		S	S	T	T	S			S					T	T				S	S
Template Predicted Secondary structure								.
Template SS confidence
		5	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		243	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	V	H	H	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	I	V	E	Y
Template Known Secondary structure							T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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