Job Description P42684 Confidence 100.00% Date Thu Apr 26 09:29:57 BST 2012 Rank 180 Aligned Residues 247 % Identity 18% Template c2v62A_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase vrk2; PDBTitle: structure of vaccinia-related kinase 2 Resolution 1.7 Å

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		289	290	.	.	.	.	.	.					.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.															.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure										.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	M	K	H	K	L	G	G	.	.	.	.	G	Q	Y	G	E	V	Y	V	G	V	W	K	K	Y	S	L	T	V	A	V	K	T	L	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	M	E	V	E	E	F	L	K	E	A	A	V	M	K	E	I	K	H	P	N	L	V	Q	L	L	G	V
Query Conservation										.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	D	D	M	E	G	N	Q	W	V	L	G	K	K	I	L	I	Y	L	A	F	P	T	N	K	P	E	K	D	A	R	H	V	V	K	V	E	Y	Q	E	G	P	L	F	S	E	L	K	F	Y	Q	R	V	A	K	K	D	C	I	K	K	W	I	E	R	K	Q	L	D	Y	L	G	I	P	L	F	Y	G	S
Template Known Secondary structure						T	T	S																	S	S	S		G	G	G																																						T		S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		351	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.			420	.	.	.	.
Predicted Secondary structure								.	.	.	.																																																																.	.
Query SS confidence								.	.	.	.																																																																.	.
Query Sequence		C	T	L	E	P	P	.	.	.	.	F	Y	I	V	T	E	Y	M	P	Y	G	N	L	L	D	Y	L	R	E	C	N	R	E	E	V	T	A	V	V	L	L	Y	M	A	T	Q	I	S	S	A	M	E	Y	L	E	K	K	N	F	I	H	R	D	L	A	A	R	N	C	L	V	G	E	.	.	N	H	V	V	K
Query Conservation								.	.	.	.																																																																.	.
Alig confidence								.	.	.	.									.														.	.																																								.	.
Template Conservation																				.														.	.
Template Sequence		G	L	T	E	F	K	G	R	S	Y	R	F	M	V	M	E	R	L	.	G	I	D	L	Q	K	I	S	G	Q	N	G	T	.	.	F	K	K	S	T	V	L	Q	L	G	I	R	M	L	D	V	L	E	Y	I	H	E	N	E	Y	V	H	G	D	I	K	A	A	N	L	L	L	G	Y	K	N	P	D	Q	V	Y
Template Known Secondary structure						S	S	S												.									B	G	G	G	B	.	.																							T	T				S			S	G	G	G					S	S	S	T	T	S
Template Predicted Secondary structure																				.														.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.							.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.
Query Sequence		V	A	D	F	G	L	S	R	L	M	T	G	D	T	Y	T	A	H	.	.	.	.	.	.	A	G	A	K	F	P	I	K	W	T	A	P	E	S	L	A	Y	N	T	F	S	I	K	S	D	V	W	A	F	G	V	L	L	W	E	I	A	T	Y	G	M	S	P	Y	P	G	I	D	L	S	Q	V	Y	D	L	L
Query Conservation																				.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.																																							.
Template Conservation																																																																.
Template Sequence		L	A	D	Y	G	L	S	Y	R	Y	C	P	N	G	N	H	K	Q	Y	Q	E	N	P	R	K	G	H	N	G	T	I	E	F	T	S	L	D	A	H	K	G	V	A	L	S	R	R	S	D	V	E	I	L	G	Y	C	M	L	R	W	L	C	.	G	K	L	P	W	E	Q	N	L	K	D	P	V	A	V	Q	T
Template Known Secondary structure						T	T				S	S	G	G	G									G	G	G		S		S		T	T	T								T																						.	S	S		T	T	G	G	G	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		499	500	.	.	.	.	.	.											.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	G	Y	R	M	E	Q	.	.	.	.	.	.	.	.	.	.	P	E	G	C	P	P	K	V	Y	E	L	M	R	A	C	W	K	W	S	P	A	D	R	P	S	F	A	E	T	H	Q	A	F
Query Conservation										.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	T	N	L	L	D	E	L	P	Q	S	V	L	K	W	A	P	S	G	S	S	C	C	E	I	A	Q	F	L	V	C	A	H	S	L	A	Y	D	E	K	P	N	Y	Q	A	L	K	K	I	L
Template Known Secondary structure									T	T	T							S		T	T	S														T			T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions