Job Description A1X283 Confidence 23.43% Date Thu Apr 26 09:27:51 BST 2012 Rank 329 Aligned Residues 58 % Identity 28% Template c3qfqE_ PDB info PDB header:dna binding protein/dna Chain: E: PDB Molecule:large t antigen; PDBTitle: asymmetric assembly of merkel cell polyomavirus large t-antigen origin2 binding domains at the viral origin Resolution 2.90 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	E	A	I	Y	R	R	Y	S	K	F	F	D	L	Q	M	Q	M	L	D	K	F	P	M	E	G	G	Q	K	D	P	K	Q	R	I	I	P	F	L	P	G	K	I	L	F	R	R	S	H	I	R	D	V	A	V	K	R	L	I	P	I	D	E	Y	C	K	A	L
Query Conservation
Alig confidence																					.								.	.	.	.	.																					.	.	.	.	.
Template Conservation																					.								.	.	.	.	.																					.	.	.	.	.
Template Sequence		S	C	F	A	I	Y	T	T	S	D	K	A	I	E	L	Y	D	K	I	.	E	K	F	K	V	D	F	.	.	.	.	.	K	S	R	H	A	C	E	L	G	C	I	L	L	F	I	T	L	S	K	H	.	.	.	.	.	R	V	S	A	I	K	N	F	C	S	T	F
Template Known Secondary structure																			T	T	.	G	G	G					.	.	.	.	.						B	T	T	B												.	.	.	.	.										T	T	T
Template Predicted Secondary structure																					.								.	.	.	.	.																					.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.						360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.						380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions