Job Description P43403 Confidence 97.59% Date Thu Apr 26 09:45:10 BST 2012 Rank 386 Aligned Residues 129 % Identity 23% Template c3tdvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:gentamicin resistance protein; PDBTitle: structure of the gdp complex of wild-type aminoglycoside 2'-2 phosphotransferase-iiia Resolution 2.20 Å

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		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.			.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.											.	.
Query SS confidence																																																							.	.	.											.	.
Query Sequence		L	G	C	G	N	F	G	S	V	R	Q	G	V	Y	R	M	R	K	K	Q	I	D	V	A	I	K	V	L	K	Q	G	T	E	K	A	D	T	E	E	M	M	R	E	A	Q	I	M	H	Q	L	D	N	P	.	.	.	Y	I	V	R	L	I	G	V	C	Q	.	.	A	E	A	L	M	L	V	M	E	M	A	G
Query Conservation																																																							.	.	.											.	.
Alig confidence														.	.	.	.						.	.	.	.	.	.																											.	.	.											.	.
Template Conservation														.	.	.	.						.	.	.	.	.	.
Template Sequence		L	G	E	G	F	R	N	Y	A	I	L	V	.	.	.	.	N	G	D	W	V	.	.	.	.	.	.	F	R	F	P	K	S	Q	Q	G	A	D	E	L	N	K	E	I	Q	L	L	P	L	L	V	G	C	V	K	V	N	I	P	Q	Y	V	Y	I	G	K	R	S	D	G	N	P	F	V	G	Y	R	K	V	Q
Template Known Secondary structure						S	S							.	.	.	.	T	T	T			.	.	.	.	.	.					S	S																		G	G	G		S	S	B											T	T	S
Template Predicted Secondary structure														.	.	.	.						.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.					.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	P	L	H	K	F	L	V	G	K	R	E	E	I	P	V	S	N	V	A	E	L	L	H	Q	V	S	M	G	M	K	Y	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.
Template Sequence		G	Q	I	L	G	E	D	G	M	A	V	.	.	.	F	P	D	D	A	K	D	R	L	A	L	Q	L	A	E	F	M	N	E	L	S	A	F	P	V	E	T	A	I	S	A	G	V	P	V	T	N	L	K	N	K	I	L	L	L	S	E	A	V	E	D	Q	V	F	P	L	L	D	E	S	L	R	D	Y	L	T
Template Known Secondary structure		S										T	.	.	.																							S								T	T			B																		T	G	G	G	S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
																	454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.					.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	N	R	H	Y	.	.	.	.	A	K	I	S	D	F	G	L	S	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		L	R	F	Q	S	Y	M	T	H	P	V	Y	T	R	Y	T	P	R	L	I	H	G	D	L	S	P	D	H	F	L	T	N	L	N	S	R	Q	T	P	L	T	G	I	I	D	F	G	D	A	A	I
Template Known Secondary structure																							S				G	G	G					T	T		S	S		S								T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions