Job Description P43403 Confidence 97.89% Date Thu Apr 26 09:45:10 BST 2012 Rank 381 Aligned Residues 129 % Identity 20% Template c3lzhA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aph(2")-id/aph(2")-iva; PDBTitle: crystal structure of aminoglycoside phosphotransferase aph(2")-2 id/aph(2")-iva Resolution 2.00 Å

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		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.				.	.	400	.	.	.	.	.	.	.	.	.	410					.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.														.	.	.	.
Query SS confidence																																																								.	.	.														.	.	.	.
Query Sequence		L	G	C	G	N	F	G	S	V	R	Q	G	V	Y	R	M	R	K	K	Q	I	D	V	A	I	K	V	L	K	Q	G	T	E	K	A	D	T	E	E	M	M	R	E	A	Q	I	M	H	Q	L	D	N	P	Y	.	.	.	I	V	R	L	I	G	V	C	Q	A	E	A	L	.	.	.	.	M	L	V	M	E	M
Query Conservation																																																								.	.	.														.	.	.	.
Alig confidence														.	.	.	.				.	.	.											.	.	.																				.	.	.														.	.	.	.
Template Conservation														.	.	.	.				.	.	.											.	.	.
Template Sequence		S	G	E	G	N	D	C	I	A	Y	E	I	.	.	.	.	N	G	N	.	.	.	F	I	F	K	F	P	K	H	S	R	.	.	.	A	S	I	N	L	L	N	E	V	T	V	L	K	T	I	H	N	E	L	S	L	P	I	P	E	V	V	F	T	G	X	P	S	E	X	C	Q	X	S	F	A	G	F	T	K
Template Known Secondary structure						S	S							.	.	.	.	T	T	T	.	.	.							S	S			.	.	.																T	T		S	S	S													S	S		S		S
Template Predicted Secondary structure														.	.	.	.				.	.	.											.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.					40	.	.				.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	G	G	P	L	H	K	F	L	V	G	K	R	E	E	I	P	V	S	N	V	A	E	L	L	H	Q	V	S	M	G	M	K	Y	L	E	E	K	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		I	K	G	V	P	L	T	P	L	L	L	K	N	.	.	.	L	P	K	Q	S	Q	D	Q	A	A	K	D	L	A	R	F	L	S	E	L	H	S	I	N	I	S	G	F	K	S	N	L	V	L	D	F	R	E	K	I	N	E	D	N	K	K	I	K	K	L	L	S	R	E	L	K	G	H	Q	X	K	K	V	D
Template Known Secondary structure															.	.	.	S																						S			T	T	S		G	G	G	B																		T	T	T	T	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
																					458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.			.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	R	D	L	A	A	R	N	V	L	L	V	N	R	H	.	.	Y	A	K	I	S	D	F	G	L	S	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation
Template Sequence		D	F	Y	R	D	I	L	D	N	E	I	Y	F	K	Y	Y	P	C	L	I	H	N	D	F	S	S	D	H	I	L	F	D	T	E	K	N	T	I	C	G	I	I	D	F	G	D	A	A	I
Template Known Secondary structure									T		G	G	G	T									S	S		S	G	G	G					T	T	T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions