Job Description P43403 Confidence 98.40% Date Thu Apr 26 09:45:10 BST 2012 Rank 371 Aligned Residues 129 % Identity 26% Template c3hamA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminoglycoside phosphotransferase; PDBTitle: structure of the gentamicin-aph(2")-iia complex Resolution 2.50 Å

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		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		L	G	C	G	N	F	G	S	V	R	Q	G	V	Y	R	M	R	K	K	Q	I	D	V	A	I	K	V	L	K	Q	G	T	E	K	A	D	T	E	E	M	M	R	E	A	Q	I	M	H	Q	L	D	N	P	Y	I	.	V	R	L	I	G	V	C	Q	A	E	A	L	M	L	V	M	E	M	A	G	G	G	P	L
Query Conservation																																																									.
Alig confidence														.	.	.	.				.	.	.											.	.	.																					.
Template Conservation														.	.	.	.				.	.	.											.	.	.
Template Sequence		L	S	S	G	D	D	S	D	T	F	L	C	.	.	.	.	N	E	Q	.	.	.	Y	V	V	K	V	P	K	R	D	S	.	.	.	V	R	I	S	Q	K	R	E	F	E	L	Y	R	F	L	E	N	C	K	L	S	Y	Q	I	P	A	V	V	Y	Q	S	D	R	F	N	I	M	K	Y	I	K	G	E	R	I
Template Known Secondary structure						S	S							.	.	.	.	T	T	T	.	.	.							S	S	S		.	.	.																T	T	S			S	S	B									S	S										B
Template Predicted Secondary structure														.	.	.	.				.	.	.											.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.					.	.	.				.	40	.	.	.	.	.	.	.	.				.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	K	F	L	V	G	K	R	E	E	I	P	V	S	N	V	A	E	L	L	H	Q	V	S	M	G	M	K	Y	L	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.
Template Sequence		T	Y	E	Q	Y	H	K	.	.	.	L	S	E	K	E	K	D	A	L	A	Y	D	E	A	T	F	L	K	E	L	H	S	I	E	I	D	C	S	V	S	L	F	S	D	A	L	V	N	K	K	D	K	F	L	Q	D	K	K	L	L	I	S	I	L	E	K	E	Q	L	L	T	D	E	M	L	E	H	I	E	T
Template Known Secondary structure							T	T	.	.	.	S																						S				T	T	S					T	T	B																					T	T
Template Predicted Secondary structure									.	.	.
Template SS confidence
		94	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
																	455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	F	V	H	R	D	L	A	A	R	N	V	L	L	V	N	R	H	Y	A	K	I	S	D	F	G	L	S	K	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	Y	E	N	I	L	N	N	A	V	L	F	K	Y	T	P	C	L	V	H	N	D	F	S	A	N	N	M	I	F	R	N	N	R	L	F	G	V	I	D	F	G	D	F	N	V
Template Known Secondary structure								T		G	G	G	G									S			S	G	G	G					T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions