Job Description P43403 Confidence 99.93% Date Thu Apr 26 09:45:10 BST 2012 Rank 292 Aligned Residues 160 % Identity 27% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		P	F	F	Y	G	S	I	S	R	A	E	A	E	E	H	L	K	L	A	G	M	A	D	G	L	F	L	L	R	Q	C	L	R	S	L	G	G	Y	V	L	S	L	V	H	D	V	R	F	.	H	H	F	P	I	E	R	Q	L	N	G	T	Y	A	I	A	G	G	K	A	H	C	G	P	A	E	L	C	E	F	Y
Query Conservation																																																		.
Alig confidence						.														.	.	.											.																	.								.	.
Template Conservation						.														.	.	.											.																									.	.
Template Sequence		P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	.	.	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	.	.	H	S	E	H	Y	T	C	S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y
Template Known Secondary structure		T	T			.														.	.	.	S	S									.	S	S	T	T										T	T										.	.		S	S					T	T				S	S								T
Template Predicted Secondary structure						.														.	.	.											.																									.	.
Template SS confidence
		793	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.				810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.			.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	D	P	D	G	L	P	C	N	L	R	K	P	C	N	R	P	S	G	L	E	P	Q	P	G	V	F	D	C	L	R	D	A	M	V	R	D	Y	V	R	Q	T	W	K	L	E	G	E	A	L	E	Q	A	I	I	S	Q	A	P	Q	V	E	K	L	I	A	T	T	A	H	E	R	M	P	W	Y	H	S	S
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Sequence		V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	L	R	N	L	K	S	I	K	A	.	.	.	.	.	.	.	.	.	H	A	K	Y	F	N	S
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	S	T	T	B		S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template SS confidence
		866	.																																																				.	.	870	.	.	.	.	.	.	.	.										.	880	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		L	T	R	E	E	A	E	R	K	L	Y	S	G	A	Q	T	D	G	K	F	L	L	R	P	R	.	K	E	Q	G	T	Y	A	L	S	L	I	Y	G	K	T	V	Y	H	Y	L	I	S	Q	D	K	A	G	K	Y	C	I	P	E	G	T	K	F	D	T	L	W	Q	L	V	E	Y	L	K	L
Query Conservation																											.
Alig confidence				.	.																						.																							.	.							.	.
Template Conservation				.	.																																													.	.							.	.
Template Sequence		P	E	.	.	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	.	.	S	D	M	L	T	Y	.	.	N	N	S	T	F	K	D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure		T	T	.	.	T	S						T			S	S	S									S	S	S	T	T								S	S	S									.	.	S	S	S				.	.	T	T				S	S
Template Predicted Secondary structure				.	.																																													.	.							.	.
Template SS confidence
		886	.			.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.			.	.	.	.	.	.			.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions