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Job DescriptionP43403
Confidence100.00%DateThu Apr 26 09:45:10 BST 2012
Rank104Aligned Residues247
% Identity25%Templatec2bdwB_
PDB info PDB header:transferaseChain: B: PDB Molecule:hypothetical protein k11e8.1d; PDBTitle: crystal structure of the auto-inhibited kinase domain of2 calcium/calmodulin activated kinase ii
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   335....340.........350.........360.........370..... ....380.........390.........400..... ....410..
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Query Sequence  DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGT. EKADTEEMMREAQIMHQLDNPYIVRLIGVC. QAEALML
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Template Sequence  SDNYDVKEELGKGAFSVVRRCVHKTTGL. . EFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYL
Template Known Secondary structure  TTTTTTTT

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   10.........20.........30....... ..40.........50.........60.........70.........80.......
 
   413......420.........430.........440.........450.........460......... 470.........480.........
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Query Sequence  VMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLL. . . VNRHYAKISDFGLSKALGAD
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Template Sequence  VFDLVTGGELFEDIVAREF. YSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDS
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S
BTT
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TT
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   88.90.........100...... ...110.........120.........130.........140.........150.........160......
 
   490.........500.........510.........520.........530.........540.........550.........560. .....
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Query Sequence  DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECP. . . PECPP
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Template Sequence  . . . . EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLV. GYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTP
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B


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TTGGGGS
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   168.170.........180.........190.........200........ .210.........220.........230.........240..
 
   567..570.........580.........
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Query Sequence  ELYALMSDCWIYKWEDRPDFLTV
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Template Sequence  EAKSLIDSMLTVNPKKRITADQA
Template Known Secondary structure  S
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   243......250.........260.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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