Job Description Q6XZF7 Confidence 99.92% Date Thu Apr 26 09:30:42 BST 2012 Rank 10 Aligned Residues 215 % Identity 22% Template c3odoA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 1; PDBTitle: crystal structure of the dh/ph domains of p115-rhogef Resolution 2.90 Å

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		760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.		.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		S	Q	S	S	S	L	V	A	P	S	G	S	V	S	A	E	N	P	E	Q	R	M	L	E	K	R	A	K	V	I	E	E	L	L	Q	T	E	R	D	Y	I	R	D	L	E	M	C	I	E	R	I	M	V	P	M	Q	Q	A	Q	.	V	P	N	I	D	F	E	G	L	F	G	N	M	Q	M	V	I	K	V	S
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		Q	T	S	P	P	G	W	R	E	L	V	P	P	D	T	L	H	S	L	P	K	S	Q	V	K	R	Q	E	V	I	S	E	L	L	V	T	E	A	A	H	V	R	M	L	R	V	L	H	D	L	F	F	Q	P	M	A	E	C	L	F	F	P	L	E	E	L	Q	N	I	F	P	S	L	D	E	L	I	E	V	H
Template Known Secondary structure				S				S	T	T	T	S						T	T	S																																T								T	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		839	840	.	.	.	.	.	.	.	.									.	850	.	.	.	.	.	.	.	.	.						860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.		.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.												.	.	.	.	.																											.
Query SS confidence												.	.	.	.	.	.	.	.												.	.	.	.	.																											.
Query Sequence		K	Q	L	L	A	A	L	E	I	S	.	.	.	.	.	.	.	.	D	A	V	G	P	V	F	L	G	H	R	.	.	.	.	.	D	E	L	E	G	T	Y	K	I	Y	C	Q	N	H	D	E	A	I	A	L	L	E	I	Y	E	K	.	D	E	K	I	Q	K	H	L	Q	D	S	L	A	D	L	K	S	L	Y
Query Conservation												.	.	.	.	.	.	.	.												.	.	.	.	.																											.
Alig confidence												.	.	.	.	.	.	.	.												.	.	.	.	.																											.																		.	.
Template Conservation																																																																																.	.
Template Sequence		S	L	F	L	D	R	L	M	K	R	R	Q	E	S	G	Y	L	I	E	E	I	G	D	V	L	L	A	R	F	D	G	A	E	G	S	W	F	Q	K	I	S	S	R	F	C	S	R	Q	S	F	A	L	E	Q	L	K	A	K	Q	R	K	D	P	R	F	C	A	F	V	Q	E	A	E	S	R	P	R	C	.	.
Template Known Secondary structure															S		S														S																	T													T	T													T	S	G	G	G	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		905	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	W	G	C	T	N	Y	I	N	L	G	S	F	L	I	K	P	V	Q	R	V	M	R	Y	P	L	L	L	M	E	L	L	N	S	T	P	E	S	H	P	D	K	V	P	L	T	N	A	V	L	A	V	K	E	I	N	V	N	I	N	E	Y	K	R	R	K	D	L	V	L	K	Y	R	K	G	D	E	D
Query Conservation
Alig confidence		.	.	.	.	.	.																															.
Template Conservation		.	.	.	.	.	.																															.
Template Sequence		.	.	.	.	.	.	R	R	L	Q	L	K	D	M	I	P	T	E	M	Q	R	L	T	K	Y	P	L	L	L	Q	S	I	G	Q	N	T	.	E	E	P	T	E	R	E	K	V	E	L	A	A	E	C	C	R	E	I	L	H	H	V	N	Q	A	V	R	D	M	E	D	L	L	R	L	K	D	Y	Q	R	R
Template Known Secondary structure		.	.	.	.	.	.	T	T							T	T																			T		.		S
Template Predicted Secondary structure		.	.	.	.	.	.																															.
Template SS confidence
								550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.		580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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