Job Description Q6XZF7 Confidence 70.58% Date Thu Apr 26 09:30:42 BST 2012 Rank 284 Aligned Residues 190 % Identity 13% Template c3dyuB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:sorting nexin-9; PDBTitle: crystal structure of snx9px-bar (230-595), h32 Resolution 4.10 Å

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		1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.					.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		D	E	V	F	E	E	T	E	K	N	F	R	M	Q	E	R	L	I	K	S	F	I	R	D	L	S	L	Y	L	Q	H	I	.	.	.	.	R	E	S	A	C	V	K	V	V	A	A	V	S	M	W	D	V	C	M	E	R	G	H	R	D	L	E	Q	F	E	R	V	H	R	Y	I	S	D	Q	L	F	T	N	F
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		E	Q	K	C	E	A	V	G	K	F	T	K	A	M	D	D	G	V	K	E	L	L	T	V	G	Q	E	H	W	K	R	C	T	G	P	L	P	K	E	Y	Q	K	I	G	K	A	L	Q	S	L	A	T	V	F	S	S	S	G	Y	Q	G	E	T	D	L	N	D	A	I	T	E	A	G	K	T	Y	E	E	I	A
Template Known Secondary structure																																		T	T																					T	T	S			S	S		S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		1096	.							.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		K	E	.	.	.	.	.	.	R	T	E	R	L	V	I	S	P	L	N	Q	L	L	S	M	F	T	G	P	H	K	L	V	Q	K	R	F	D	K	L	L	D	F	Y	N	C	T	E	R	A	E	K	L	K	D	K	K	T	L	E	E	L	Q	S	A	R	N	N	Y	E	A	L	N	A	Q	L	L	D	E	L	P
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.																																																.	.
Template Conservation																																																									.	.
Template Sequence		S	L	V	A	E	Q	P	K	K	D	L	H	F	L	M	E	C	N	H	E	Y	K	G	F	L	G	C	F	P	D	I	I	G	T	H	K	G	A	I	E	K	V	K	E	S	D	K	L	V	A	T	S	K	I	T	.	.	L	Q	D	K	Q	N	M	V	K	R	V	S	I	M	S	Y	A	L	Q	A	E	M	N
Template Known Secondary structure						T	S	G	G	G	T																	T															T	T								T	T	S	S		.	.
Template Predicted Secondary structure																																																									.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530			.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	H	Q	Y	A	Q	G	L	F	T	N	C	V	H	G	Y	A	E	A	H	C	D	F	V	H	Q	A	L	E	Q	L	K	P	L	L	S	L	L	K	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	F	H	S	N	R	I	Y	D	Y	N	S	V	I	R	L	Y	L	E	Q	Q	V	Q	F	Y	E	T	I	A	E	K	L	R	Q	A	L	S	R	F	P	V	M
Template Known Secondary structure																																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions