Job Description Q6XZF7 Confidence 59.27% Date Thu Apr 26 09:30:42 BST 2012 Rank 287 Aligned Residues 125 % Identity 21% Template c2ihfA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: crystal structure of deletion mutant delta 228-252 r190a of the2 single-stranded dna binding protein from thermus aquaticus Resolution 1.90 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	F	V	G	D	I	I	E	V	L	A	V	V	D	E	F	W	L	L	G	K	K	E	D	V	T	G	Q	F	P	S	S	F	V	E	I	V	T	I	P	S	L	K	E	G	E	R	L	F	V	C	I	C	E	F	T	S	Q	E	L	D	N	L	P	L	H	R	G	D	L	V	I	L	D	G	I	P	T	A
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		L	L	E	K	G	Q	L	I	F	V	E	G	R	L	E	Y	R	Q	W	.	.	E	K	D	G	E	K	K	S	E	V	Q	V	R	A	E	F	I	D	P	L	E	G	R	G	R	A	L	N	Q	V	I	L	M	G	N	L	T	R	D	P	D	L	R	Y	T	P	Q	G	T	A	V	V	R	L	G	L	A	V	N
Template Known Secondary structure		T			T	T															.	.	S	S	S	S	S	S	S																														S	S								T	T
Template Predicted Secondary structure																					.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	L	Q	G	R	S	C	W	G	A	R	G	F	F	P	S	S	C	V	R	E	L	C	L	S	S	Q	S	R	Q	W	H	S	Q	S	A	L	F	Q	I	P	E	Y	S	M	G	Q	A	R	A	L	M	G	L	S	A	Q	L	D	E	E	L	D	F	R	E	G	D	V	I	T	I	I	G	V	P	E	P	G
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	.	.	.	E	R	T	H	F	L	E	V	Q	A	W	R	E	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	A	S	E	L	A	K	G	D	G	L	L	V	I	G	R	L	V	N	D
Template Known Secondary structure			.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T			T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161									.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																																				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	F	E	G	E	L	E	G	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	Q	T	R	V	E	A	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions