Job Description A1A4S6 Confidence 98.59% Date Wed May 9 18:01:49 BST 2012 Rank 296 Aligned Residues 313 % Identity 9% Template c3odwB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:rho guanine nucleotide exchange factor 1; PDBTitle: crystal structure of the linker-dh/ph domains of p115-rhogef Resolution 3.20 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		K	D	G	K	N	L	I	A	A	T	K	S	L	S	V	A	Q	R	K	F	A	H	S	L	R	D	F	K	F	E	F	I	G	D	A	.	.	.	V	T	D	D	E	R	C	I	D	A	S	L	R	E	F	S	N	F	L	K	N	L	E	E	Q	R	E	I	M	A	L	S	V	T	E	T	L	I	K	P	L	E
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence		K	S	Q	V	K	R	Q	E	V	I	S	E	L	L	V	T	E	A	A	H	V	R	M	L	R	V	L	H	D	L	F	F	Q	P	M	A	E	C	L	F	F	P	L	E	E	L	Q	N	I	F	P	S	L	D	E	L	I	E	V	H	S	L	F	L	D	R	L	M	K	R	R	Q	E	S	I	E	E	I	G	D
Template Known Secondary structure																																T								T	S	S									S	T	T																					T
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
		118	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		K	F	R	K	E	Q	L	G	A	V	K	.	E	E	K	K	K	F	D	K	E	T	E	K	N	Y	S	L	I	D	K	H	L	N	L	S	A	K	K	K	D	S	H	L	Q	E	A	D	I	Q	V	E	Q	N	R	Q	H	F	Y	E	L	S	L	E	Y	V	C	K	L	Q	E	I	Q	E	R	K	K	F	E	F
Query Conservation													.
Alig confidence													.																												.	.																															.
Template Conservation																																									.	.																															.
Template Sequence		V	L	L	A	R	F	D	G	A	E	G	S	W	F	Q	K	I	S	S	R	F	C	S	R	Q	S	F	A	L	E	Q	L	K	A	K	Q	R	K	D	.	.	P	R	F	C	A	F	V	Q	E	A	E	S	R	P	R	C	R	R	L	Q	L	K	D	M	I	P	T	E	M	Q	.	R	L	T	K	Y	P	L	L
Template Known Secondary structure								S																	T																.	.												T	S	G	G	G	T	T							T	T					.
Template Predicted Secondary structure																																									.	.																															.
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.		.	.	.	.	.	.	570	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		V	E	P	M	L	S	F	F	Q	G	M	F	T	F	Y	H	Q	G	H	E	L	A	K	D	F	N	H	Y	K	M	E	L	Q	I	N	I	Q	N	T	R	N	R	F	E	G	T	R	S	.	E	V	E	E	L	M	N	K	I	R	Q	N	P	K	D	H	K	R	A	S	Q	F	T	A	E	G	Y	L	Y	V	Q
Query Conservation																																																		.
Alig confidence												.	.	.	.	.																																		.																														.	.
Template Conservation												.	.	.	.	.																																																																.	.
Template Sequence		L	Q	S	I	G	Q	N	T	E	E	.	.	.	.	.	P	T	E	R	E	K	V	E	L	A	A	E	C	C	R	E	I	L	H	H	V	N	Q	A	V	R	D	M	E	D	L	L	R	L	K	D	Y	Q	R	R	L	D	L	S	H	L	R	Q	S	L	S	E	F	K	N	L	D	I	T	K	K	K	L	.	.
Template Known Secondary structure							T	T			S	.	.	.	.	.																																												T	T	T	T	T			T	T	S	S	S				S	S	S			.	.
Template Predicted Secondary structure												.	.	.	.	.																																																																.	.
Template SS confidence
		572	.	.	.	.	.	.	.	580	.						.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	R	P	A	P	F	G	S	S	W	V	K	H	Y	C	M	Y	R	K	A	A	K	K	F	N	M	I	P	F	E	H	R	S	G	G	K	L	G	D	G	E	V	F	F	L	K	E	C	T	K	R	H	T	D	S	I	D	R	R	F	C	F	D	I	E	A	A	D	R	P	G	V	S	L	T	M	Q	A	F
Query Conservation
Alig confidence		.																									.	.																																			.						.	.	.
Template Conservation		.																									.	.																																			.						.	.	.
Template Sequence		.	V	H	E	G	P	L	T	W	R	V	T	K	V	H	V	L	L	L	D	D	L	L	L	L	.	.	L	Q	R	Q	D	E	R	L	L	L	K	S	L	R	P	V	L	R	L	T	S	A	M	T	R	E	V	A	T	D	H	K	A	F	.	Y	V	L	F	T	.	.	.	E	A	Q	I	Y	E	L	V	A	Q
Template Known Secondary structure		.																			S	S					.	.					T	T									S				G	G	G							T	T		T	T			.						.	.	.										S
Template Predicted Secondary structure		.																									.	.																																			.						.	.	.
Template SS confidence
			649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.			.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.		.	.	.	710	.				.	.	.	.	.	.	.	.	720	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	E	E	R	K	Q	W	L	E	A	L	G	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	S	E	R	K	N	W	C	A	L	I	T	E	T
Template Known Secondary structure		S	T
Template Predicted Secondary structure
Template SS confidence
		744	.	.	.	.	.	750	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions