Phyre 2 alignment of A1A4S6 with c3odoA

Job Description A1A4S6
Confidence 98.40% Date Wed May 9 18:01:49 BST 2012

Rank 313 Aligned Residues 327

% Identity 11% Template c3odoA_

PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 1; PDBTitle: crystal structure of the dh/ph domains of p115-rhogef

Resolution 2.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	F	I	K	E	L	I	K	D	G	K	N	L	I	A	A	T	K	S	L	S	V	A	Q	R	K	F	A	H	S	L	R	D	F	K	F	E	F	I	G	D	A	V	T	D	D	E	R	C	I	D	A	S	L	R	E	F	S	N	F	L	K	N	L	E	E	Q	R	E	I	M	A	L	S	V	T	E	T	L	I
Query Conservation
Alig confidence																																																												.
Template Conservation																																																												.
Template Sequence	D	T	L	H	S	L	P	K	S	Q	V	K	R	Q	E	V	I	S	E	L	L	V	T	E	A	A	H	V	R	M	L	R	V	L	H	D	L	F	F	Q	P	M	A	E	C	L	F	F	P	L	E	E	L	Q	N	I	F	P	S	.	L	D	E	L	I	E	V	H	S	L	F	L	D	R	L	M	K	R	R	Q
Template Known Secondary structure				T	T	S																																T								T	S	S									S	T	T	.
Template Predicted Secondary structure																																																												.
Template SS confidence
	405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.		.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.

	114	.								.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.														.
Query SS confidence			.	.	.	.	.	.	.														.
Query Sequence	K	P	.	.	.	.	.	.	.	L	E	K	F	R	K	E	Q	L	G	A	V	K	.	E	E	K	K	K	F	D	K	E	T	E	K	N	Y	S	L	I	D	K	H	L	N	L	S	A	K	K	K	D	S	H	L	Q	E	A	D	I	Q	V	E	Q	N	R	Q	H	F	Y	E	L	S	L	E	Y	V	C	K	L
Query Conservation			.	.	.	.	.	.	.														.
Alig confidence			.	.	.	.	.	.	.														.																												.	.
Template Conservation																																																			.	.
Template Sequence	E	S	G	Y	L	I	E	E	I	G	D	V	L	L	A	R	F	D	G	A	E	G	S	W	F	Q	K	I	S	S	R	F	C	S	R	Q	S	F	A	L	E	Q	L	K	A	K	Q	R	K	D	.	.	P	R	F	C	A	F	V	Q	E	A	E	S	R	P	R	C	R	R	L	Q	L	K	D	M	I	P	T	E
Template Known Secondary structure		S		S														S																	T													T	T		.	.												T	S	G	G	G	T	T							T	T
Template Predicted Secondary structure																																																			.	.
Template SS confidence
	484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.

	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																				.	.																																																											.
Query SS confidence																				.	.																																																											.
Query Sequence	Q	E	I	Q	E	R	K	K	F	E	F	V	E	P	M	L	S	F	F	.	.	Q	G	M	F	T	F	Y	H	Q	G	H	E	L	A	K	D	F	N	H	Y	K	M	E	L	Q	I	N	I	Q	N	T	R	N	R	F	E	G	T	R	S	E	V	E	E	L	M	N	K	I	R	Q	N	P	K	D	H	K	R	.
Query Conservation																				.	.																																																											.
Alig confidence			.																	.	.																																																											.
Template Conservation			.
Template Sequence	M	Q	.	R	L	T	K	Y	P	L	L	L	Q	S	I	G	Q	N	T	E	E	P	T	E	R	E	K	V	E	L	A	A	E	C	C	R	E	I	L	H	H	V	N	Q	A	V	R	D	M	E	D	L	L	R	L	K	D	Y	Q	R	R	L	D	L	S	H	L	R	Q	S	S	D	P	M	L	S	E	F	K	N
Template Known Secondary structure			.															T			S																																																T				G	G	G	S	S		S	S
Template Predicted Secondary structure			.
Template SS confidence
	562	.		.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640

					263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300													.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	A	S	Q	F	T	A	E	G	Y	L	Y	V	Q	E	K	R	P	A	P	F	G	S	S	W	V	K	H	Y	C	M	Y	R	K	A	A	K	K	F	.	.	.	.	.	.	.	.	.	.	.	.	N	M	I	P	F	E	H	R	S	G	G	K	L	G	D	G	E	V	F	F	L	K	E	C	T	K
Query Conservation	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.																			.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence	L	D	I	T	K	K	K	L	V	H	E	G	P	L	T	W	R	V	T	K	D	K	.	.	.	.	.	A	V	E	V	H	V	L	L	L	D	D	L	L	L	L	L	Q	R	Q	D	E	R	L	L	L	K	S	H	S	R	T	L	T	P	T	P	D	G	K	T	M	L	R	P	V	L	R	L	T	S	A	M	T
Template Known Secondary structure			T	T	S	S												S	S	S	S		.	.	.	.	.										S	S									T	T							B		S		S	S	S	S				S			B		S				S	T	T
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
	641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.						.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.

	327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence	R	H	T	D	S	I	D	R	R	F	C	F	D	I	E	A	A	D	R	P	G	V	S	L	T	M	Q	A	F	S	E	E	E	R	K	Q	W	L	E	A	L	G	G	K
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence	R	E	V	A	T	D	H	K	A	F	.	Y	V	L	F	T	W	D	Q	E	A	Q	I	Y	E	L	V	A	Q	T	V	S	E	R	K	N	W	C	A	L	I	T	E	T
Template Known Secondary structure				S	S	S	T	T			.							S	S										S	S
Template Predicted Secondary structure											.
Template SS confidence
	716	.	.	.	720	.	.	.	.	.		.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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