Job Description A1A4S6 Confidence 97.80% Date Wed May 9 18:01:49 BST 2012 Rank 328 Aligned Residues 316 % Identity 12% Template c3ksyA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:son of sevenless homolog 1; PDBTitle: crystal structure of the histone domain, dh-ph unit, and2 catalytic unit of the ras activator son of sevenless (sos) Resolution 3.18 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.
Predicted Secondary structure																																																																						.	.	.	.
Query SS confidence																																																																						.	.	.	.
Query Sequence		L	I	A	A	T	K	S	L	S	V	A	Q	R	K	F	A	H	S	L	R	D	F	K	F	E	F	I	G	D	A	V	T	D	D	E	R	C	I	D	A	S	L	R	E	F	S	N	F	L	K	N	L	E	E	Q	R	E	I	M	A	L	S	V	T	E	T	L	I	.	.	.	.	K	P	L	E	K	F	R	K
Query Conservation																																																																						.	.	.	.
Alig confidence																																																																						.	.	.	.
Template Conservation
Template Sequence		Y	Y	D	L	V	K	A	F	M	A	E	I	R	Q	Y	I	R	E	L	N	L	I	I	K	V	F	R	E	P	F	V	S	N	S	K	L	F	S	A	N	D	V	E	N	I	F	S	R	I	V	D	I	H	E	L	S	V	K	L	L	G	H	I	E	D	T	V	E	M	T	D	E	G	S	P	H	P	L	V	G
Template Known Secondary structure																										T	T								T	T	T	S										S	S																								S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		122	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		E	Q	L	G	A	V	K	E	E	K	K	.	.	K	F	D	K	E	T	E	K	N	Y	S	L	I	D	K	H	L	N	L	S	A	K	K	K	D	S	H	L	Q	E	A	D	I	Q	V	E	Q	N	R	Q	H	F	Y	E	L	S	L	E	Y	V	C	K	L	Q	E	I	Q	E	R	K	K	F	E	F	V	E	P
Query Conservation													.	.
Alig confidence													.	.																																																													.
Template Conservation																																																																											.
Template Sequence		S	C	F	E	D	L	A	E	E	L	A	F	D	P	Y	E	S	Y	A	R	D	I	L	R	P	G	F	H	D	R	F	L	S	Q	L	S	K	P	G	A	A	L	Y	L	Q	S	I	G	E	G	F	K	E	A	V	Q	Y	V	L	P	R	L	L	L	A	P	V	Y	H	C	L	H	Y	.	F	E	L	L	K	Q
Template Known Secondary structure										T	T	T	T	S												T	T							T	T	S	S	S	T	T										T	T								T					T	T										.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	S	F	F	Q	G	M	F	T	F	Y	H	Q	G	H	E	L	A	K	D	F	N	H	Y	K	M	E	L	Q	I	N	I	Q	N	T	R	N	R	F	E	G	T	R	S	E	V	E	E	L	M	N	K	I	R	Q	N	P	K	D	H	K	R	A	S	Q	F	T	A	E	G	Y	L	Y	V	Q	E	K	R	P
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		L	E	E	K	S	E	D	.	Q	E	D	K	E	C	L	K	Q	A	I	T	A	L	L	N	V	Q	S	G	M	E	K	I	C	S	K	S	L	A	K	R	R	L	S	E	S	A	A	I	K	K	M	N	E	I	Q	K	N	I	D	G	W	E	G	K	D	I	G	Q	C	C	N	E	F	I	M	E	G	T	L	T
Template Known Secondary structure					S				.														T											T	T	S	T	T												S								T	S	S	S			S	S		G	G	G	T		S
Template Predicted Secondary structure									.
Template SS confidence
		360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.						.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																															.	.	.	.	.																											.
Query SS confidence																															.	.	.	.	.																											.
Query Sequence		A	P	F	G	S	S	W	V	K	H	Y	C	M	Y	R	K	A	A	K	K	F	N	M	I	P	F	E	H	R	.	.	.	.	.	S	G	G	K	L	G	D	G	E	V	F	F	L	K	E	C	T	K	R	H	T	D	S	I	D	R	.	R	F	C	F	D	I	E	A	A	D	R	P	G	V	S	L	T	M	Q
Query Conservation																															.	.	.	.	.																											.
Alig confidence							.	.																							.	.	.	.	.																											.												.	.
Template Conservation							.	.																																																																		.	.
Template Sequence		R	V	G	A	K	.	.	H	E	R	H	I	F	L	F	D	G	L	M	I	C	C	K	S	N	H	G	Q	P	R	L	P	G	A	S	N	A	E	Y	R	L	K	E	K	F	F	M	R	K	V	Q	I	N	D	K	D	D	T	N	E	Y	K	H	A	F	E	I	I	L	K	D	E	.	.	N	S	V	I	F	S
Template Known Secondary structure			T	T		S	.	.	S								T	T									T	T					T	T	S				S										S	S									S	S	S			S							T	T	S	.	.
Template Predicted Secondary structure							.	.																																																																		.	.
Template SS confidence
		452	.	.	.	.			.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.			.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	S	E	E	E	R	K	Q	W	L	E	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	S	A	E	E	K	N	N	W	M	A	A	L
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.	.	.	.	.	.	.	.	540	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions