Job Description A1A4S6 Confidence 99.61% Date Wed May 9 18:01:49 BST 2012 Rank 34 Aligned Residues 153 % Identity 16% Template c3a8nA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:t-lymphoma invasion and metastasis-inducing PDBTitle: crystal structure of the tiam1 phccex domain Resolution 4.50 Å

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		265	.	.	.	.	270	.	.	.	.	.	.									.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.																																																						.
Query SS confidence														.	.	.	.	.	.	.	.																																																						.
Query Sequence		Q	F	T	A	E	G	Y	L	Y	V	Q	E	.	.	.	.	.	.	.	.	K	R	P	A	P	F	G	S	S	W	V	K	H	Y	C	M	Y	R	K	A	A	K	K	F	N	M	I	P	F	E	H	R	S	G	G	K	L	G	D	G	E	V	F	F	L	K	E	C	T	K	R	H	T	.	D	S	I	D	R	R
Query Conservation														.	.	.	.	.	.	.	.																																																						.
Alig confidence														.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.																						.
Template Conservation																																														.	.	.	.	.	.	.	.
Template Sequence		T	V	R	K	A	G	A	L	A	V	K	N	F	L	V	H	K	K	N	K	K	V	E	S	A	T	R	R	K	W	K	H	Y	W	V	S	L	K	G	C	T	L	F	F	.	.	.	.	.	.	.	.	Y	E	T	D	S	V	P	K	H	A	V	W	V	E	N	S	I	V	Q	A	V	P	E	H	P	K	K	D
Template Known Secondary structure				S															T	T	T																			T	T					.	.	.	.	.	.	.	.	B							S	S			B			S							T	T	S	S	S	S
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.									.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	C	F	D	I	E	A	A	D	R	P	G	V	S	L	T	M	Q	A	F	S	E	E	E	R	K	Q	W	L	E	A	L	G	G	K	E	A	L	S	H	S	F	N	T	A	I	I	P	R	P	E	G	N	A	Q	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		F	V	F	C	L	S	N	S	L	G	.	.	D	A	F	L	F	Q	T	T	S	Q	T	E	L	E	N	W	I	T	A	I	H	S	A	C	A	A	A	V	A	R	H	H	H	K	E	D	T	L	R	L	L	K	S	E	I	K	K	L	E	Q	K	I	D	M	D	E	K	M	K	K	M	G	E	M	Q	L	S	S
Template Known Secondary structure		S							T	T	T	.	.								S																								T	T		S																								T								T	T
Template Predicted Secondary structure												.	.
Template SS confidence
		513	.	.	.	.	.	.	520	.	.			.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
																																													393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	M	G	F	T	I	I	R	K	C	I	S	A	V	E	T	R	G	I	N	D	Q	G	L	Y	R	V	V	G	V	S	S	K	V	Q	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.
Template Conservation																																															.
Template Sequence		V	T	D	S	K	K	K	K	T	I	L	D	Q	I	F	V	W	E	Q	N	L	E	Q	F	Q	M	D	L	F	R	F	R	C	Y	L	A	S	L	Q	G	G	E	L	P	N	.	P	K	R	L	L	A	F	A	S	R	P	T	K	V	A	M	G	R	L	G	I	F	S	V	S	S	F	H	A	L	V	A	A
Template Known Secondary structure					G	G	G	T	T	T																										T	T	T	T	T	T	S					.							T									T	T	T	S	S	T	T		T	T					T	T	T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.		.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions