Job Description A1A4S6 Confidence 98.42% Date Wed May 9 18:01:49 BST 2012 Rank 312 Aligned Residues 299 % Identity 11% Template c2vrwB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor Resolution 1.85 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	L	I	K	D	G	K	N	L	I	A	A	T	K	S	L	S	V	A	Q	R	K	F	A	H	S	L	R	D	F	K	F	E	F	I	G	D	A	V	T	D	D	E	R	C	I	D	A	S	L	R	E	F	S	N	F	L	K	N	L	E	E	Q	R	E	I	M	A	L	S	V	T	E	T	L	I	K	P	L
Query Conservation
Alig confidence																																						.	.	.	.	.	.												.	.	.	.
Template Conservation																																						.	.	.	.	.	.												.	.	.	.
Template Sequence		D	K	R	C	C	C	L	R	E	I	Q	Q	T	E	E	K	Y	T	D	T	L	G	S	I	Q	Q	H	F	M	K	P	L	Q	R	F	L	.	.	.	.	.	.	K	P	Q	D	M	E	T	I	F	V	N	.	.	.	.	I	E	E	L	F	S	V	H	T	H	F	L	K	E	L	K	D	A	L	A	G	P	G
Template Known Secondary structure																													T					T	T	T	S	.	.	.	.	.	.										T	T	.	.	.	.																					S	G	G
Template Predicted Secondary structure																																						.	.	.	.	.	.												.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	F	R	K	E	Q	L	G	A	V	K	E	E	K	K	K	F	D	K	E	T	E	K	N	Y	S	L	I	D	K	H	L	N	L	S	A	K	K	K	D	S	H	L	Q	E	A	D	I	Q	V	E	Q	N	R	Q	H	F	Y	E	L	S	L	E	Y	V	C	K	L	Q	E	I	Q	E	R	K	K	F	E	F
Query Conservation
Alig confidence																																																																	.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		A	T	T	L	Y	Q	V	F	I	K	Y	K	E	R	F	L	V	Y	G	R	Y	C	S	Q	V	E	S	A	S	K	H	L	D	Q	V	A	T	A	R	E	D	V	Q	M	K	L	E	E	C	S	Q	R	A	N	N	G	R	F	T	L	R	D	L	.	.	.	L	M	V	P	M	Q	R	V	L	K	Y	H	L	L
Template Known Secondary structure		G	T	T									T	T	G	G	G																																							T	T	S							.	.	.	T	T							T	T
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	P	M	L	S	F	F	Q	G	M	F	T	F	Y	H	Q	G	H	E	L	A	K	D	F	N	H	Y	K	M	E	L	Q	I	N	I	Q	N	T	R	N	R	F	E	G	T	R	S	E	V	E	E	L	M	N	K	I	R	Q	N	P	K	D	H	K	R	A	S	Q	F	T	A	E	G	Y	L	Y	V	Q	E
Query Conservation
Alig confidence												.	.	.	.	.																												.																																		.	.	.	.
Template Conservation												.	.	.	.	.																												.																																		.	.	.	.
Template Sequence		L	Q	E	L	V	K	H	T	Q	D	.	.	.	.	.	A	T	E	K	E	N	L	R	L	A	L	D	A	M	R	D	L	A	Q	C	V	N	E	V	K	R	D	.	N	E	T	L	R	Q	I	T	N	F	Q	L	S	I	E	N	L	D	Q	S	L	A	N	Y	G	R	P	K	I	D	G	E	L	.	.	.	.
Template Known Secondary structure												.	.	.	.	.																												.																S		S	S		G	G	G	G		S								.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.																												.																																		.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.						350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	P	A	P	F	G	S	S	W	V	K	H	Y	C	M	Y	R	K	A	A	K	K	F	N	M	I	P	F	E	H	R	S	G	G	K	L	G	D	G	E	V	F	F	L	K	E	C	T	K	R	H	T	D	S	I	D	R	R	F	C	F	D	I	E	A	A	D	R	P	G	V	S	L	T	M	Q	A	F	S
Query Conservation
Alig confidence																											.	.	.	.	.																													.	.	.								.
Template Conservation																											.	.	.	.	.																													.	.	.								.
Template Sequence		K	I	T	S	V	E	R	R	S	K	T	D	R	Y	A	F	L	L	D	K	A	L	L	I	C	.	.	.	.	.	K	R	R	G	D	S	Y	D	L	K	A	S	V	N	L	H	S	F	Q	V	R	D	K	K	W	S	H	M	.	.	.	F	L	L	I	E	D	Q	.	G	A	Q	G	Y	E	L	F	F	K	T
Template Known Secondary structure						S	S			S										S	S						.	.	.	.	.				T	T										T	T	T							T	T				.	.	.						T	T	.		S								S	S
Template Predicted Secondary structure																											.	.	.	.	.																													.	.	.								.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.						.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.				.	.	.	.	.	.	.		470	.	.	.	.	.	.	.	.	.	480
		357	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	E	R	K	Q	W	L	E	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	L	K	K	K	W	M	E	Q	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		489	490	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions