Job Description A1A4S6 Confidence 46.01% Date Wed May 9 18:01:49 BST 2012 Rank 400 Aligned Residues 253 % Identity 12% Template c2nrjA_ PDB info PDB header:toxin Chain: A: PDB Molecule:hbl b protein; PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus Resolution 2.03 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.
Predicted Secondary structure														.															.																																										.	.	.	.
Query SS confidence														.															.																																										.	.	.	.
Query Sequence		Q	P	L	E	F	S	D	C	Y	L	D	S	.	P	W	F	R	E	R	I	R	A	H	E	A	E	L	.	E	R	T	N	K	F	I	K	E	L	I	K	D	G	K	N	L	I	A	A	T	K	S	L	S	V	A	Q	R	K	F	A	H	S	L	R	D	F	K	F	E	.	.	.	.	F	I	G	D	A	V	T
Query Conservation														.															.																																										.	.	.	.
Alig confidence														.															.																																										.	.	.	.
Template Conservation
Template Sequence		P	D	V	N	F	E	G	I	T	I	N	G	Y	V	D	L	P	G	R	I	V	Q	D	Q	K	N	A	R	A	H	A	V	T	W	D	T	K	V	K	K	Q	L	L	D	T	L	N	G	I	V	E	Y	D	T	T	F	D	N	Y	Y	E	T	X	V	E	A	I	N	T	G	D	G	E	T	L	K	E	G	I	T
Template Known Secondary structure							S	S				T	T		T	T																						T																																	T
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																				.	.																																									.	.	.	.
Query SS confidence																																				.	.																																									.	.	.	.
Query Sequence		D	D	E	R	C	I	D	A	S	L	R	E	F	S	N	F	L	K	N	L	E	E	Q	R	E	I	M	A	L	S	V	T	E	T	.	.	L	I	K	P	L	E	K	F	R	K	E	Q	L	G	A	V	K	E	E	K	K	K	F	D	K	E	T	E	K	N	Y	S	L	I	D	K	H	L	N	L	.	.	.	.
Query Conservation																																				.	.																																									.	.	.	.
Alig confidence																																				.	.																																									.	.	.	.
Template Conservation
Template Sequence		D	L	R	G	E	I	Q	Q	N	Q	K	Y	A	Q	Q	L	I	E	E	L	T	K	L	R	D	S	I	G	H	D	V	R	A	F	G	S	N	K	E	L	L	Q	S	I	L	K	N	Q	G	A	D	V	D	A	D	Q	K	R	L	E	E	V	L	G	S	V	N	Y	Y	K	Q	L	E	G	F	N	V	X	K	G
Template Known Secondary structure																																																	T	T														T	G	G	G		G	G	G						G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
																152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	K	K	K	D	S	H	L	Q	E	A	D	I	Q	V	E	Q	N	R	Q	H	F	Y	E	L	S	L	E	Y	V	C	K	L	Q	E	I	Q	E	R	K	K	F	.	.	E	F	V	E	P	M	L	S	F	F	Q	G	M	F	T	F	Y	H	Q	G	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.
Template Conservation
Template Sequence		A	I	L	G	L	P	I	I	G	G	I	I	V	G	V	A	R	D	N	L	G	K	L	E	P	L	L	A	E	L	R	Q	T	V	D	Y	K	V	T	L	N	R	V	V	G	V	A	Y	S	N	I	N	E	X	H	K	A	L	D	D	A	I	N	A	L	T	Y	X	S	T	Q	W	H	D	L	D	S	Q	Y	S
Template Known Secondary structure									T	T	T							G	G	G													S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.									.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.
Query Sequence		E	L	A	K	D	F	N	H	.	.	.	.	.	.	.	.	Y	K	M	E	L	Q	I	N	I	Q	N	T	R	N	R	F	E	G	T	R	S	E	V	E	E	L	M	N	K	I	R	Q	N
Query Conservation										.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	L	G	H	I	E	N	A	A	Q	K	A	D	Q	N	K	F	K	F	L	K	P	N	L	N	A	A	K	D	S	W	K	T	L	R	T	D	A	V	T	L	K	E	G	I	K	E	L
Template Known Secondary structure											T	T			S	T	T	T	T	G	G	G																											T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions